Detailed information    

insolico Bioinformatically predicted

Overview

Name   xcpW   Type   Machinery gene
Locus tag   N5P16_RS07935 Genome accession   NZ_CP104734
Coordinates   1716303..1716929 (+) Length   208 a.a.
NCBI ID   WP_004928166.1    Uniprot ID   -
Organism   Acinetobacter baylyi strain JAT2044     
Function   pseudopilus assembly (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1711303..1721929
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  N5P16_RS07900 (N5P16_07900) kdsB 1711820..1712581 (+) 762 WP_004928188.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  N5P16_RS07905 (N5P16_07905) - 1712597..1713583 (+) 987 WP_004928184.1 DNA polymerase III subunit delta' -
  N5P16_RS07910 (N5P16_07910) - 1713586..1713930 (+) 345 WP_004928181.1 PilZ domain-containing protein -
  N5P16_RS07915 (N5P16_07915) - 1713948..1714721 (+) 774 WP_004928179.1 TatD family hydrolase -
  N5P16_RS07920 (N5P16_07920) - 1714761..1715369 (+) 609 WP_004928177.1 TetR/AcrR family transcriptional regulator -
  N5P16_RS07925 (N5P16_07925) - 1715382..1715930 (+) 549 WP_004928174.1 type II secretion system protein -
  N5P16_RS07930 (N5P16_07930) xcpV 1715920..1716306 (+) 387 WP_004928170.1 type II secretion system minor pseudopilin GspI Machinery gene
  N5P16_RS07935 (N5P16_07935) xcpW 1716303..1716929 (+) 627 WP_004928166.1 type II secretion system minor pseudopilin GspJ Machinery gene
  N5P16_RS07940 (N5P16_07940) gspK 1716944..1717912 (+) 969 WP_004928163.1 type II secretion system minor pseudopilin GspK -
  N5P16_RS07945 (N5P16_07945) - 1718071..1718667 (+) 597 WP_004928159.1 6-pyruvoyl trahydropterin synthase family protein -
  N5P16_RS07950 (N5P16_07950) ung 1718721..1719434 (+) 714 WP_004928156.1 uracil-DNA glycosylase -
  N5P16_RS07955 (N5P16_07955) - 1719431..1720552 (+) 1122 WP_004928151.1 enoyl-CoA hydratase/isomerase family protein -
  N5P16_RS07960 (N5P16_07960) tadA 1720558..1721082 (+) 525 WP_004928147.1 tRNA adenosine(34) deaminase TadA -
  N5P16_RS07965 (N5P16_07965) - 1721184..1721618 (+) 435 WP_004928145.1 SRPBCC family protein -

Sequence

Protein


Download         Length: 208 a.a.        Molecular weight: 23852.53 Da        Isoelectric Point: 7.0138

>NTDB_id=731704 N5P16_RS07935 WP_004928166.1 1716303..1716929(+) (xcpW) [Acinetobacter baylyi strain JAT2044]
MKRHLGFTLIELLVSIAIFAILSALGWKIFDYLIKIKDRNQVYEQQLFELQDAYQLLLRDSLQIIPNTANINGQLRPALS
LSENILQFSRGGVSDPLKEGLAPYERIEYRYVASEKVVYRLKYKNLNVVSSEQPVSSVVLKNVDQFQIAVLNPQLSTQWP
DPQIDLTQSQNLRILPRGLKVNLNIAGTEYEWIFPLMDTQFLSGVQNN

Nucleotide


Download         Length: 627 bp        

>NTDB_id=731704 N5P16_RS07935 WP_004928166.1 1716303..1716929(+) (xcpW) [Acinetobacter baylyi strain JAT2044]
ATGAAAAGGCATCTAGGTTTTACATTGATTGAACTGCTGGTATCGATTGCAATTTTTGCAATACTTTCTGCGTTGGGATG
GAAAATATTTGACTATCTCATCAAAATTAAAGACCGTAACCAGGTATATGAACAACAATTATTTGAGTTGCAGGATGCAT
ATCAGCTTTTACTTCGTGATAGTTTGCAAATTATTCCGAATACAGCAAACATCAATGGTCAGCTTAGGCCTGCATTGAGT
TTAAGTGAAAATATATTGCAATTTAGTAGGGGTGGGGTAAGCGATCCACTCAAAGAGGGTTTGGCACCTTATGAACGCAT
AGAATATCGTTATGTGGCTTCTGAAAAAGTGGTATATCGACTCAAATATAAAAACCTGAATGTTGTTAGTAGTGAGCAAC
CCGTATCTAGTGTTGTACTTAAAAATGTAGATCAGTTTCAAATTGCTGTGCTTAATCCACAGCTATCAACTCAATGGCCA
GATCCACAAATAGATCTTACACAGTCTCAAAATCTAAGAATTTTGCCAAGAGGTTTGAAAGTTAATCTTAATATTGCGGG
AACAGAATATGAATGGATTTTCCCGCTGATGGATACTCAGTTTTTGAGTGGTGTTCAGAACAATTAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein J (T2SSJ)

(58-193)

Prokaryotic N-terminal methylation motif (N_methyl)

(1-25)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  xcpW Acinetobacter baumannii D1279779

60.714

94.231

0.572