Detailed information    

insolico Bioinformatically predicted

Overview

Name   comF   Type   Machinery gene
Locus tag   N5P16_RS03650 Genome accession   NZ_CP104734
Coordinates   811213..811647 (+) Length   144 a.a.
NCBI ID   WP_004923844.1    Uniprot ID   A0A7G2SAW3
Organism   Acinetobacter baylyi strain JAT2044     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 806213..816647
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  N5P16_RS03640 (N5P16_03640) comC 806290..810642 (+) 4353 WP_004923840.1 PilC/PilY family type IV pilus protein Machinery gene
  N5P16_RS03645 (N5P16_03645) comE 810704..811213 (+) 510 WP_004923843.1 type IV pilin protein Machinery gene
  N5P16_RS03650 (N5P16_03650) comF 811213..811647 (+) 435 WP_004923844.1 type IV pilin protein Machinery gene
  N5P16_RS03655 (N5P16_03655) rpsP 811795..812052 (+) 258 WP_004923845.1 30S ribosomal protein S16 -
  N5P16_RS03660 (N5P16_03660) rimM 812072..812620 (+) 549 WP_004923846.1 ribosome maturation factor RimM -
  N5P16_RS03665 (N5P16_03665) trmD 812668..813417 (+) 750 WP_004923847.1 tRNA (guanosine(37)-N1)-methyltransferase TrmD -
  N5P16_RS03670 (N5P16_03670) rplS 813559..813930 (+) 372 WP_004923849.1 50S ribosomal protein L19 -
  N5P16_RS03675 (N5P16_03675) - 814000..814968 (-) 969 WP_004923853.1 esterase/lipase family protein -
  N5P16_RS03680 (N5P16_03680) - 815100..816131 (-) 1032 WP_004923856.1 lipase secretion chaperone -

Sequence

Protein


Download         Length: 144 a.a.        Molecular weight: 15586.71 Da        Isoelectric Point: 8.9405

>NTDB_id=731697 N5P16_RS03650 WP_004923844.1 811213..811647(+) (comF) [Acinetobacter baylyi strain JAT2044]
MRVRHGFTLIELMIVVAIIGILAAIAYPSYQNYKIRVNRSDVQSELIRVSQQLQSYKMVNHGYANASLAGLGNAASYPVT
GTAFYTLNLAVDSDNQGYVLTATPISSTMQAGNGIICLNQDGQKFWSKAATACSLSSNSTWDGR

Nucleotide


Download         Length: 435 bp        

>NTDB_id=731697 N5P16_RS03650 WP_004923844.1 811213..811647(+) (comF) [Acinetobacter baylyi strain JAT2044]
ATGAGAGTAAGACATGGCTTTACATTGATTGAACTCATGATTGTAGTTGCTATTATTGGAATTTTAGCAGCAATTGCTTA
TCCCTCTTATCAAAACTATAAAATTAGAGTGAATCGTAGCGATGTACAGTCTGAGCTGATTCGGGTTTCACAGCAATTGC
AAAGTTATAAAATGGTGAATCATGGTTATGCCAATGCTTCACTTGCTGGACTTGGCAATGCAGCCAGTTATCCTGTAACT
GGCACAGCATTTTACACACTAAATTTGGCGGTAGATTCAGATAATCAGGGATATGTACTCACAGCAACACCTATATCGAG
CACAATGCAAGCTGGTAATGGCATTATCTGTCTGAATCAGGATGGGCAAAAATTTTGGAGCAAAGCCGCAACGGCATGTA
GCCTGAGTAGCAACTCGACTTGGGATGGGCGTTAA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(1-27)

Type IV minor pilin ComP, DNA uptake sequence receptor (ComP_DUS)

(28-117)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A7G2SAW3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comF Acinetobacter baylyi ADP1

100

100

1
  pilE Acinetobacter baumannii D1279779

53.571

97.222

0.521
  pilA Acinetobacter baumannii strain A118

37.063

99.306

0.368