Detailed information    

insolico Bioinformatically predicted

Overview

Name   hns   Type   Regulator
Locus tag   N5P16_RS00645 Genome accession   NZ_CP104734
Coordinates   142873..143199 (-) Length   108 a.a.
NCBI ID   WP_004920639.1    Uniprot ID   A0A7G2SG96
Organism   Acinetobacter baylyi strain JAT2044     
Function   repress the expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 137873..148199
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  N5P16_RS00625 (N5P16_00625) - 138040..138693 (-) 654 WP_004920630.1 FHA domain-containing protein -
  N5P16_RS00630 (N5P16_00630) gspD 138763..141081 (-) 2319 WP_004920631.1 type II secretion system secretin GspD -
  N5P16_RS00635 (N5P16_00635) - 141122..141967 (-) 846 WP_004920634.1 type II secretion system protein N -
  N5P16_RS00640 (N5P16_00640) gspN 141967..142710 (-) 744 WP_004920637.1 type II secretion system protein N -
  N5P16_RS00645 (N5P16_00645) hns 142873..143199 (-) 327 WP_004920639.1 H-NS family nucleoid-associated regulatory protein Regulator
  N5P16_RS00650 (N5P16_00650) - 143406..143846 (-) 441 WP_004920640.1 acyl-CoA thioesterase -
  N5P16_RS00655 (N5P16_00655) - 143855..145048 (-) 1194 WP_004920644.1 hypothetical protein -
  N5P16_RS00660 (N5P16_00660) - 145064..145828 (-) 765 WP_227499415.1 hypothetical protein -
  N5P16_RS00665 (N5P16_00665) - 145903..146673 (-) 771 WP_004920650.1 uroporphyrinogen-III synthase -
  N5P16_RS00670 (N5P16_00670) hemC 146680..147600 (-) 921 WP_004920652.1 hydroxymethylbilane synthase -

Sequence

Protein


Download         Length: 108 a.a.        Molecular weight: 12531.18 Da        Isoelectric Point: 5.3445

>NTDB_id=731676 N5P16_RS00645 WP_004920639.1 142873..143199(-) (hns) [Acinetobacter baylyi strain JAT2044]
MKPDISELSVEELKRLQEEAEALIATKKDQAIEDAYNQLLEVAENVGYTVEQLLEYGAQKRKKTTRKSVEPRYRNKHNAE
ETWTGRGKQPRWLVAELEKGAKLEDFLI

Nucleotide


Download         Length: 327 bp        

>NTDB_id=731676 N5P16_RS00645 WP_004920639.1 142873..143199(-) (hns) [Acinetobacter baylyi strain JAT2044]
ATGAAACCAGATATTAGTGAGCTATCAGTAGAAGAGTTGAAACGTTTGCAAGAAGAAGCAGAAGCTTTAATTGCGACGAA
AAAAGATCAGGCAATTGAAGATGCGTATAATCAATTACTTGAAGTTGCAGAAAATGTAGGTTATACCGTTGAACAGCTAC
TTGAATATGGTGCTCAAAAACGTAAAAAAACAACACGTAAATCTGTTGAGCCACGTTACCGCAATAAACACAATGCTGAA
GAAACCTGGACAGGTCGTGGTAAGCAACCACGCTGGTTAGTTGCTGAACTTGAAAAAGGTGCAAAATTAGAAGATTTCCT
GATCTAA

Domains

Predicted by InterproScan.

H-NS histone family (Histone_HNS)

(12-102)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A7G2SG96

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  hns Acinetobacter baumannii strain A118

91.667

100

0.917