Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   NAL19_RS02490 Genome accession   NZ_CP104733
Coordinates   543409..544791 (-) Length   460 a.a.
NCBI ID   WP_225086750.1    Uniprot ID   -
Organism   Pectobacterium sp. F1-1     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 538409..549791
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NAL19_RS02460 (NAL19_538) pepP 538565..539893 (-) 1329 WP_263059650.1 Xaa-Pro aminopeptidase -
  NAL19_RS02465 (NAL19_539) - 539980..540567 (-) 588 WP_263058660.1 YecA family protein -
  NAL19_RS02470 (NAL19_540) zapA 540760..541089 (+) 330 WP_012773157.1 cell division protein ZapA -
  NAL19_RS02480 (NAL19_541) - 541387..542028 (+) 642 WP_263058661.1 5-formyltetrahydrofolate cyclo-ligase -
  NAL19_RS02485 (NAL19_542) nadR 542025..543278 (-) 1254 WP_263058662.1 multifunctional transcriptional regulator/nicotinamide-nucleotide adenylyltransferase/ribosylnicotinamide kinase NadR -
  NAL19_RS02490 (NAL19_543) radA 543409..544791 (-) 1383 WP_225086750.1 DNA repair protein RadA Machinery gene
  NAL19_RS02495 (NAL19_544) serB 544809..545786 (-) 978 WP_225086751.1 phosphoserine phosphatase -
  NAL19_RS02500 (NAL19_545) - 545943..546626 (+) 684 WP_225086752.1 YtjB family periplasmic protein -
  NAL19_RS02505 (NAL19_546) - 546693..547616 (-) 924 WP_263058663.1 hypothetical protein -
  NAL19_RS02510 (NAL19_547) prfC 547908..549497 (+) 1590 WP_225086754.1 peptide chain release factor 3 -

Sequence

Protein


Download         Length: 460 a.a.        Molecular weight: 49578.11 Da        Isoelectric Point: 7.4218

>NTDB_id=731652 NAL19_RS02490 WP_225086750.1 543409..544791(-) (radA) [Pectobacterium sp. F1-1]
MAKAVKRAFVCNECGADYPRWQGQCSACHAWNTITEVRLASASVSRSDRLTGYAGESAGVSRVQKLSEISLEALPRFSTG
FQEFDRVLGGGVVPGSAILIGGNPGAGKSTLLLQTLCKLSENMKTLYVTGEESLQQVAMRAHRLNLPTQNLNMLSETSIE
QICLIAEQEQPKLMVIDSIQVMHLADIQSSPGSVAQVRETAAYLTRFAKTRGVAIVMVGHVTKDGSLAGPKVLEHCIDCS
VLLDGDADSRFRTLRSHKNRFGAVNELGVFAMTEQGLREVSNPSAIFLSRGDEVTSGSSVMVVWEGTRPLLVEIQALVDQ
SMMSNPRRVAVGLEQNRLAILLAVLHRHGGLQMSDQDVFVNVVGGVKVTETSADLALLLSLVSSFRDRPLPQDLVIFGEV
GLAGEIRPVPSGQERITEAAKHGFKRAIVPHANMPKKAPASMQVFGVKKLADALAILDDL

Nucleotide


Download         Length: 1383 bp        

>NTDB_id=731652 NAL19_RS02490 WP_225086750.1 543409..544791(-) (radA) [Pectobacterium sp. F1-1]
GTGGCAAAAGCCGTCAAACGGGCGTTTGTATGTAATGAGTGCGGGGCTGACTACCCGCGCTGGCAAGGGCAGTGCAGCGC
CTGTCATGCCTGGAACACCATTACCGAAGTTCGCCTGGCCTCGGCATCCGTATCACGTTCCGACCGTCTCACCGGCTATG
CGGGCGAGAGTGCTGGCGTCAGCCGGGTACAAAAACTTTCGGAAATCAGTCTTGAAGCCCTGCCCCGTTTTTCTACCGGT
TTTCAGGAATTTGACCGTGTTCTGGGCGGCGGTGTCGTTCCCGGCAGCGCGATTCTGATCGGCGGCAACCCCGGCGCGGG
TAAAAGTACCTTACTGCTGCAAACGCTCTGCAAGCTGTCAGAGAACATGAAAACCCTGTACGTTACTGGGGAAGAATCCT
TGCAGCAGGTGGCGATGCGGGCACACCGCCTTAATCTGCCGACCCAGAATCTCAACATGCTGTCGGAAACCAGCATCGAA
CAGATTTGTCTGATCGCCGAGCAGGAACAGCCGAAGCTGATGGTGATCGACTCCATTCAGGTCATGCATCTCGCCGATAT
TCAATCGTCTCCCGGCAGCGTGGCGCAGGTGCGTGAAACCGCCGCCTATCTGACACGCTTCGCCAAAACGCGCGGCGTCG
CTATCGTGATGGTCGGCCACGTCACCAAAGATGGCTCGCTCGCCGGGCCGAAAGTATTGGAACACTGCATCGACTGTTCC
GTCTTGCTGGACGGCGATGCCGATTCCCGTTTCCGCACCCTGCGCAGCCATAAAAACCGTTTCGGTGCCGTTAACGAGCT
GGGCGTGTTCGCGATGACGGAACAAGGGCTACGCGAGGTCAGCAATCCATCGGCGATTTTCCTTAGTCGCGGCGACGAAG
TGACGTCCGGTAGCTCCGTGATGGTGGTGTGGGAAGGCACGCGCCCGCTGCTGGTCGAAATTCAGGCGCTGGTGGATCAA
TCGATGATGTCCAACCCGCGCCGCGTAGCGGTCGGGCTGGAGCAAAACCGCTTAGCCATTCTGTTGGCAGTGCTGCATCG
CCACGGCGGCTTGCAGATGTCGGATCAGGATGTGTTTGTGAATGTCGTCGGCGGCGTCAAAGTCACCGAAACCAGTGCCG
ATCTGGCACTGCTGTTATCGCTCGTCTCCAGTTTCCGCGATCGCCCGCTGCCGCAGGATCTCGTCATCTTCGGTGAAGTC
GGTCTGGCGGGCGAAATTCGTCCGGTTCCCAGCGGACAAGAGCGGATCACCGAAGCCGCCAAGCACGGCTTCAAACGCGC
CATCGTTCCTCATGCCAATATGCCGAAGAAAGCCCCAGCCAGTATGCAGGTGTTCGGCGTGAAAAAGCTGGCCGACGCGC
TGGCAATCCTCGACGATCTCTAA

Domains

Predicted by InterproScan.

AAA domain (AAA_25)

(89-225)

Subunit ChlI of Mg-chelatase (ChlI)

(348-433)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(9-36)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

48.478

100

0.485
  radA Streptococcus mitis NCTC 12261

43.202

99.13

0.428
  radA Streptococcus mitis SK321

43.202

99.13

0.428
  radA Streptococcus pneumoniae Rx1

43.202

99.13

0.428
  radA Streptococcus pneumoniae D39

43.202

99.13

0.428
  radA Streptococcus pneumoniae R6

43.202

99.13

0.428
  radA Streptococcus pneumoniae TIGR4

43.202

99.13

0.428