Detailed information    

insolico Bioinformatically predicted

Overview

Name   ceuB   Type   Machinery gene
Locus tag   N5069_RS21310 Genome accession   NZ_CP104728
Coordinates   4288484..4289434 (-) Length   316 a.a.
NCBI ID   WP_036121145.1    Uniprot ID   -
Organism   Lysinibacillus fusiformis strain HJ.T1     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 4283484..4294434
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  N5069_RS21280 (N5069_21280) - 4283494..4284396 (-) 903 WP_144422565.1 polyprenyl synthetase family protein -
  N5069_RS21285 (N5069_21285) - 4284735..4285274 (+) 540 WP_036121143.1 hypothetical protein -
  N5069_RS21290 (N5069_21290) - 4285378..4285692 (-) 315 WP_008175171.1 antibiotic biosynthesis monooxygenase family protein -
  N5069_RS21295 (N5069_21295) - 4285694..4286713 (-) 1020 WP_008175172.1 siderophore ABC transporter substrate-binding protein -
  N5069_RS21300 (N5069_21300) - 4286780..4287541 (-) 762 WP_008175175.1 ABC transporter ATP-binding protein -
  N5069_RS21305 (N5069_21305) - 4287538..4288491 (-) 954 WP_008175176.1 iron chelate uptake ABC transporter family permease subunit -
  N5069_RS21310 (N5069_21310) ceuB 4288484..4289434 (-) 951 WP_036121145.1 ABC transporter permease Machinery gene
  N5069_RS21315 (N5069_21315) - 4289720..4290772 (-) 1053 WP_036121147.1 membrane protein -
  N5069_RS21320 (N5069_21320) menC 4290812..4291918 (-) 1107 WP_208705045.1 o-succinylbenzoate synthase -
  N5069_RS21325 (N5069_21325) - 4291940..4292764 (-) 825 WP_036121156.1 GNAT family N-acetyltransferase -
  N5069_RS21330 (N5069_21330) - 4292764..4293909 (-) 1146 WP_036121158.1 M20 peptidase aminoacylase family protein -

Sequence

Protein


Download         Length: 316 a.a.        Molecular weight: 34731.91 Da        Isoelectric Point: 10.1462

>NTDB_id=731645 N5069_RS21310 WP_036121145.1 4288484..4289434(-) (ceuB) [Lysinibacillus fusiformis strain HJ.T1]
MKIRYLLTATVVLSIVSLFIGVVDIKPSDLLDFQSEETRLFLISRVPRLVAILLAGAGMSIAGLIMQSLSRNKFVSPTTA
GTLDATRLGVLISMMFFSNVTYFQKISFAFIFALAGTLLFMQILNRIKFKDAIFIPLIGLMYGNILSSVTTFFAYKANII
QNISAWLQGDFSLIMKGRYELLYISVPVLILAYIYANRFTVAGMGEDFAKNLGLSYKLVVNLGLVLVALISTTVVLTVGV
IPFLGLIIPNIISLFKGDNLAKTLPHTALLGMSFLLFCDILGRVLIFPYEIPISMTVGVIGSAIFLVMLFRGRAYA

Nucleotide


Download         Length: 951 bp        

>NTDB_id=731645 N5069_RS21310 WP_036121145.1 4288484..4289434(-) (ceuB) [Lysinibacillus fusiformis strain HJ.T1]
ATGAAAATAAGATATCTTTTAACAGCAACTGTTGTGTTGTCTATAGTATCGCTATTTATCGGAGTAGTAGATATTAAACC
AAGTGATCTATTAGACTTCCAATCAGAAGAAACTAGACTATTTTTAATTAGTCGTGTACCTAGACTTGTTGCTATTTTGC
TAGCAGGTGCAGGTATGAGTATTGCTGGTTTAATTATGCAAAGCTTAAGTAGGAATAAGTTCGTATCACCAACGACAGCA
GGTACTTTAGATGCCACTCGACTGGGTGTATTGATTTCCATGATGTTTTTCTCGAATGTCACGTATTTCCAAAAAATTTC
CTTCGCTTTCATATTTGCTTTAGCCGGCACATTATTATTTATGCAAATATTAAATCGAATTAAGTTTAAAGATGCGATTT
TTATACCGCTTATTGGCTTAATGTATGGTAATATCCTGTCTTCCGTAACAACGTTCTTTGCTTATAAGGCAAATATTATC
CAAAACATTTCTGCATGGTTACAAGGAGATTTCTCATTAATCATGAAAGGCCGTTATGAACTGTTATACATAAGTGTACC
AGTACTTATTTTAGCTTATATTTATGCCAATCGTTTTACAGTAGCTGGTATGGGTGAGGATTTTGCTAAAAATCTTGGTC
TATCCTATAAGCTTGTGGTGAATTTAGGCTTAGTATTGGTGGCTCTTATCTCCACAACAGTGGTGCTAACAGTCGGTGTC
ATTCCGTTCCTTGGCTTGATCATACCGAATATTATTTCACTGTTTAAAGGTGATAATTTGGCAAAAACATTGCCGCATAC
AGCATTACTTGGTATGTCATTCTTATTATTCTGCGATATTTTAGGACGCGTACTGATTTTCCCTTATGAGATACCAATTA
GTATGACTGTTGGTGTAATTGGAAGTGCCATCTTCCTAGTCATGTTGTTTAGGGGGAGAGCATATGCGTAA

Domains

Predicted by InterproScan.

FecCD transport family (FecCD)

(10-311)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ceuB Campylobacter jejuni subsp. jejuni 81-176

52.215

100

0.522