Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilV   Type   Machinery gene
Locus tag   N5P21_RS12430 Genome accession   NZ_CP104727
Coordinates   2764907..2765452 (+) Length   181 a.a.
NCBI ID   WP_197887539.1    Uniprot ID   -
Organism   Pseudomonas citronellolis strain G5.80     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2759907..2770452
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  N5P21_RS12415 (N5P21_12425) - 2761017..2761859 (+) 843 WP_043266799.1 IclR family transcriptional regulator C-terminal domain-containing protein -
  N5P21_RS12420 (N5P21_12430) - 2762038..2763387 (+) 1350 WP_116423850.1 MFS transporter -
  N5P21_RS12425 (N5P21_12435) - 2764407..2764910 (+) 504 WP_261748332.1 GspH/FimT family pseudopilin -
  N5P21_RS12430 (N5P21_12440) pilV 2764907..2765452 (+) 546 WP_197887539.1 type IV pilus modification protein PilV Machinery gene
  N5P21_RS12435 (N5P21_12445) - 2765453..2766229 (+) 777 WP_261748333.1 PilW family protein -
  N5P21_RS12440 (N5P21_12450) - 2766226..2766765 (+) 540 WP_261748335.1 PilX N-terminal domain-containing pilus assembly protein -

Sequence

Protein


Download         Length: 181 a.a.        Molecular weight: 18847.52 Da        Isoelectric Point: 4.8548

>NTDB_id=731596 N5P21_RS12430 WP_197887539.1 2764907..2765452(+) (pilV) [Pseudomonas citronellolis strain G5.80]
MTRRGLAGFSLIEVLVALLVICVGVLGMLAMQGRAIAYSQDMAVRGTAAALADELMETIRTDLYSAQDAGTPLTPPASSD
YYKATGSAFPAAPSSCASLAALSAAQRLGCWAQRVQQALPDAASLMSSDFHICRSNGASTCSGTGSAIEIQLAWRVKSGE
CLEASPGSDPTICHYVLREEP

Nucleotide


Download         Length: 546 bp        

>NTDB_id=731596 N5P21_RS12430 WP_197887539.1 2764907..2765452(+) (pilV) [Pseudomonas citronellolis strain G5.80]
ATGACGCGCCGTGGCCTGGCCGGCTTCAGCCTGATCGAAGTGCTGGTGGCGCTGCTGGTGATCTGCGTCGGCGTGCTGGG
CATGCTCGCCATGCAGGGCAGGGCGATCGCCTATTCCCAGGACATGGCGGTGCGCGGCACGGCGGCAGCCCTGGCCGACG
AGCTGATGGAGACCATCCGCACCGACCTCTATTCCGCCCAGGACGCCGGCACGCCGCTGACGCCGCCGGCCAGCTCCGAC
TACTACAAGGCCACCGGCAGCGCCTTCCCGGCGGCGCCGAGCAGTTGCGCCTCGCTGGCTGCGCTGAGCGCTGCGCAGCG
CCTGGGTTGCTGGGCGCAGCGGGTGCAGCAGGCGCTGCCCGATGCCGCCAGCCTGATGAGTAGCGACTTCCACATCTGCC
GCAGCAACGGCGCCAGCACCTGCAGCGGCACTGGCTCGGCCATCGAGATCCAGCTCGCTTGGCGGGTGAAGTCCGGCGAG
TGCCTGGAGGCCAGCCCCGGCAGCGACCCGACCATCTGCCACTACGTGCTGCGCGAGGAGCCCTGA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(7-28)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilV Pseudomonas aeruginosa PAK

49.162

98.895

0.486