Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   N5934_RS03140 Genome accession   NZ_CP104691
Coordinates   563602..564228 (-) Length   208 a.a.
NCBI ID   WP_017384804.1    Uniprot ID   A0AA37AJW2
Organism   Enterobacter hormaechei strain 2022CK-00453     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 558602..569228
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  N5934_RS03125 (N5934_03125) helD 558841..560895 (-) 2055 WP_110870849.1 DNA helicase IV -
  N5934_RS03130 (N5934_03130) - 561018..561464 (+) 447 WP_003858149.1 YccF domain-containing protein -
  N5934_RS03135 (N5934_03135) yccS 561483..563645 (+) 2163 WP_015570895.1 YccS family putative transporter -
  N5934_RS03140 (N5934_03140) sxy/tfoX 563602..564228 (-) 627 WP_017384804.1 TfoX/Sxy family DNA transformation protein Regulator
  N5934_RS03145 (N5934_03145) sulA 564446..564955 (+) 510 WP_032104231.1 SOS-induced cell division inhibitor SulA -
  N5934_RS03150 (N5934_03150) ompA 565312..566364 (+) 1053 WP_017694761.1 porin OmpA -
  N5934_RS03155 (N5934_03155) matP 566430..566882 (-) 453 WP_006809347.1 macrodomain Ter protein MatP -
  N5934_RS03160 (N5934_03160) - 567069..568829 (+) 1761 WP_045911584.1 Lon protease family protein -

Sequence

Protein


Download         Length: 208 a.a.        Molecular weight: 24018.63 Da        Isoelectric Point: 9.4592

>NTDB_id=731423 N5934_RS03140 WP_017384804.1 563602..564228(-) (sxy/tfoX) [Enterobacter hormaechei strain 2022CK-00453]
MKKISYDRIYQSQEYLSPLGEIHHRALFGGYTLAVDEAVFAMVSDGELYLRACEQSAKYCVKNASSFLTLMKRGRPVLLN
YYRVDEGLWQNREKLLQLSSFALDAARKERYQRHQRNRLKDLPNLTFQIEVLLMEAGITNEETLRQLGAKTSWLKMRSKN
KALSIRVLFALEGAIEGLHEAALPADIRRELMEWFNALPESQGHHSAR

Nucleotide


Download         Length: 627 bp        

>NTDB_id=731423 N5934_RS03140 WP_017384804.1 563602..564228(-) (sxy/tfoX) [Enterobacter hormaechei strain 2022CK-00453]
ATGAAAAAGATATCTTATGATCGGATTTATCAATCTCAGGAATACCTCTCTCCGCTGGGCGAAATTCATCATCGCGCCCT
GTTTGGCGGTTATACCCTGGCCGTGGATGAAGCGGTGTTCGCGATGGTGTCTGACGGCGAGCTGTACCTTCGCGCCTGTG
AGCAAAGTGCAAAATACTGTGTAAAAAACGCCTCCTCTTTTCTGACCCTGATGAAACGAGGACGGCCAGTGCTGCTTAAT
TACTACCGTGTGGATGAAGGTCTGTGGCAAAACAGGGAAAAGCTGCTTCAGCTCTCCTCGTTTGCGCTCGATGCCGCCAG
GAAAGAGCGCTACCAGCGCCATCAGCGTAATCGGCTTAAGGATCTGCCGAACCTGACCTTTCAGATTGAGGTCCTGCTTA
TGGAGGCGGGCATTACCAATGAAGAGACGCTACGACAGTTGGGGGCGAAGACGAGCTGGCTGAAAATGCGCTCTAAGAAT
AAAGCGCTGAGTATCCGGGTATTGTTCGCGCTTGAAGGCGCCATCGAAGGGTTACATGAAGCGGCACTCCCGGCGGATAT
TCGCCGGGAGCTTATGGAGTGGTTTAATGCGCTGCCTGAGTCGCAGGGCCATCATTCCGCCAGGTAG

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

58.911

97.115

0.572