Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   N5929_RS07945 Genome accession   NZ_CP104689
Coordinates   1682867..1683493 (+) Length   208 a.a.
NCBI ID   WP_017384804.1    Uniprot ID   A0AA37AJW2
Organism   Enterobacter hormaechei strain 2020CK-00376     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 1677867..1688493
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  N5929_RS07925 (N5929_05865) - 1678266..1680026 (-) 1761 WP_261666320.1 Lon protease family protein -
  N5929_RS07930 (N5929_05860) matP 1680213..1680665 (+) 453 WP_006809347.1 macrodomain Ter protein MatP -
  N5929_RS07935 (N5929_05855) ompA 1680731..1681783 (-) 1053 WP_017694761.1 porin OmpA -
  N5929_RS07940 (N5929_05850) sulA 1682140..1682649 (-) 510 WP_261666481.1 SOS-induced cell division inhibitor SulA -
  N5929_RS07945 (N5929_05845) sxy/tfoX 1682867..1683493 (+) 627 WP_017384804.1 TfoX/Sxy family DNA transformation protein Regulator
  N5929_RS07950 (N5929_05840) yccS 1683450..1685612 (-) 2163 WP_015570895.1 YccS family putative transporter -
  N5929_RS07955 (N5929_05835) - 1685631..1686077 (-) 447 WP_003858149.1 YccF domain-containing protein -
  N5929_RS07960 (N5929_05830) helD 1686200..1688254 (+) 2055 WP_017384802.1 DNA helicase IV -

Sequence

Protein


Download         Length: 208 a.a.        Molecular weight: 24018.63 Da        Isoelectric Point: 9.4592

>NTDB_id=731406 N5929_RS07945 WP_017384804.1 1682867..1683493(+) (sxy/tfoX) [Enterobacter hormaechei strain 2020CK-00376]
MKKISYDRIYQSQEYLSPLGEIHHRALFGGYTLAVDEAVFAMVSDGELYLRACEQSAKYCVKNASSFLTLMKRGRPVLLN
YYRVDEGLWQNREKLLQLSSFALDAARKERYQRHQRNRLKDLPNLTFQIEVLLMEAGITNEETLRQLGAKTSWLKMRSKN
KALSIRVLFALEGAIEGLHEAALPADIRRELMEWFNALPESQGHHSAR

Nucleotide


Download         Length: 627 bp        

>NTDB_id=731406 N5929_RS07945 WP_017384804.1 1682867..1683493(+) (sxy/tfoX) [Enterobacter hormaechei strain 2020CK-00376]
ATGAAAAAGATATCTTATGATCGGATTTATCAATCTCAGGAATACCTCTCTCCGCTGGGCGAAATTCATCATCGCGCCCT
GTTTGGCGGTTATACCCTGGCCGTGGATGAAGCGGTGTTCGCGATGGTGTCTGACGGCGAGCTGTACCTTCGCGCCTGTG
AGCAAAGTGCAAAATACTGTGTAAAAAACGCCTCCTCTTTTCTGACACTGATGAAACGAGGACGGCCAGTGCTACTTAAT
TACTACCGTGTGGATGAAGGTCTGTGGCAAAACAGGGAAAAGCTGCTTCAGCTCTCCTCGTTTGCGCTCGATGCCGCCAG
GAAAGAGCGCTACCAGCGCCATCAGCGTAATCGGCTTAAGGATCTGCCGAACCTGACCTTTCAGATTGAGGTCCTGCTTA
TGGAGGCGGGCATTACCAATGAAGAGACGCTACGACAGTTGGGGGCGAAGACGAGCTGGCTGAAAATGCGCTCTAAGAAT
AAAGCGCTGAGTATCCGGGTATTGTTCGCGCTTGAAGGCGCCATCGAAGGGTTACATGAAGCGGCACTCCCGGCGGATAT
TCGCCGGGAGCTTATGGAGTGGTTTAATGCGCTGCCTGAGTCGCAGGGCCATCATTCCGCCAGGTAG

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

58.911

97.115

0.572