Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   N5922_RS14910 Genome accession   NZ_CP104681
Coordinates   3025521..3026150 (-) Length   209 a.a.
NCBI ID   WP_000839153.1    Uniprot ID   A0A9Q6Y251
Organism   Escherichia coli strain 2022CK-00450     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 3020521..3031150
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  N5922_RS14895 (N5922_14890) helD 3020763..3022817 (-) 2055 WP_001295354.1 DNA helicase IV -
  N5922_RS14900 (N5922_14895) yccF 3022940..3023386 (+) 447 WP_001261235.1 YccF domain-containing protein -
  N5922_RS14905 (N5922_14900) yccS 3023396..3025558 (+) 2163 WP_000875061.1 YccS family putative transporter -
  N5922_RS14910 (N5922_14905) sxy/tfoX 3025521..3026150 (-) 630 WP_000839153.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  N5922_RS14915 (N5922_14910) sulA 3026369..3026878 (+) 510 WP_000288710.1 SOS-induced cell division inhibitor SulA -
  N5922_RS14920 (N5922_14915) ompA 3027235..3028275 (+) 1041 WP_000750416.1 porin OmpA -
  N5922_RS14925 (N5922_14920) matP 3028351..3028803 (-) 453 WP_000877161.1 macrodomain Ter protein MatP -
  N5922_RS14930 (N5922_14925) ycbZ 3028989..3030749 (+) 1761 WP_000156518.1 Lon protease family protein -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24147.02 Da        Isoelectric Point: 9.2180

>NTDB_id=731392 N5922_RS14910 WP_000839153.1 3025521..3026150(-) (sxy/tfoX) [Escherichia coli strain 2022CK-00450]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=731392 N5922_RS14910 WP_000839153.1 3025521..3026150(-) (sxy/tfoX) [Escherichia coli strain 2022CK-00450]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGCAGTTACAGCCTGACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAACATCCGCCTGTCTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGTGCCATTATCGGCATTCATGAAGCTGCGCTCCCGGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

100

100

1