Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxP   Type   Regulator
Locus tag   GZN30_RS17985 Genome accession   NZ_AP019658
Coordinates   817718..818824 (+) Length   368 a.a.
NCBI ID   WP_075652578.1    Uniprot ID   -
Organism   Vibrio ponticus strain DSM 16217     
Function   autoinducer sensor (predicted from homology)   
Competence regulation

Genomic Context

Location: 812718..823824
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GZN30_RS17950 glpK 812730..814232 (+) 1503 WP_075652649.1 glycerol kinase GlpK -
  GZN30_RS17955 elbB 814339..814989 (-) 651 WP_075652572.1 isoprenoid biosynthesis glyoxalase ElbB -
  GZN30_RS21335 - 815087..815263 (-) 177 WP_167521321.1 hypothetical protein -
  GZN30_RS17960 - 815419..815670 (-) 252 WP_075652573.1 YgjV family protein -
  GZN30_RS17965 - 815943..816263 (-) 321 WP_075652574.1 DUF496 family protein -
  GZN30_RS17970 - 816452..816646 (+) 195 WP_075652575.1 hypothetical protein -
  GZN30_RS17975 - 816675..817331 (+) 657 WP_075652576.1 YceH family protein -
  GZN30_RS17980 - 817318..817638 (+) 321 WP_075652577.1 GIY-YIG nuclease family protein -
  GZN30_RS17985 luxP 817718..818824 (+) 1107 WP_075652578.1 autoinducer 2-binding periplasmic protein LuxP Regulator
  GZN30_RS17990 luxQ 818824..821370 (+) 2547 WP_075652579.1 quorum-sensing autoinducer 2 sensor kinase/phosphatase LuxQ -
  GZN30_RS17995 glpD 821479..822966 (-) 1488 WP_075652580.1 glycerol-3-phosphate dehydrogenase -
  GZN30_RS18000 - 823061..823282 (-) 222 WP_075652581.1 hypothetical protein -

Sequence

Protein


Download         Length: 368 a.a.        Molecular weight: 41657.12 Da        Isoelectric Point: 4.9464

>NTDB_id=73138 GZN30_RS17985 WP_075652578.1 817718..818824(+) (luxP) [Vibrio ponticus strain DSM 16217]
MLKTALASLIAFTTTFSAIASAQTPQVLNGYWQYEEYLQANPKQKVLTEQLVRAVRNTPVPLKIKQSKPILISVVYPGQQ
ISDYWVRNIKAFEARLDELDIEYELNQVFTRPSLDARQQSLSLLEAVQNNTNYLIFTLDTTRHRKFIEHVLSSTDTKLIL
QNITTPVKAWSEQQPFMYVGFDHVMGTQALEGFYKQNTAVGGKYSVLYFSEGYVSDARGDTFIEDMTHHDNYQLVSSFYT
KADRESGYKAALNAVKKDPDIDFIYACSTDVALGAVKALKELNRTDILINGWGGGTAELEAIERGEIDVTVMRMNDDTGI
AMAEAIKWDLEGKSVPIVYSGDFEVVTTEDGQEKIERLKQRAFRYSDR

Nucleotide


Download         Length: 1107 bp        

>NTDB_id=73138 GZN30_RS17985 WP_075652578.1 817718..818824(+) (luxP) [Vibrio ponticus strain DSM 16217]
ATGCTCAAAACAGCGTTGGCTTCGCTTATTGCCTTTACCACTACCTTTTCGGCGATAGCTTCTGCACAAACTCCCCAAGT
TTTAAATGGTTACTGGCAATATGAAGAGTATCTTCAGGCTAACCCTAAACAAAAAGTCCTCACTGAGCAGTTGGTACGAG
CAGTAAGAAATACGCCAGTGCCTCTCAAAATCAAGCAATCGAAGCCGATTTTGATCTCTGTGGTTTATCCAGGGCAGCAG
ATTTCCGATTACTGGGTGCGCAATATCAAAGCCTTTGAAGCGCGCTTGGATGAGCTTGATATTGAATATGAGTTGAATCA
GGTCTTTACTCGCCCAAGTCTTGATGCAAGGCAGCAAAGCTTATCGTTACTTGAAGCGGTGCAAAATAACACCAATTATC
TAATTTTTACCTTAGATACCACACGACACCGTAAATTCATCGAGCATGTACTTAGTTCAACCGACACTAAGCTGATCCTG
CAAAATATTACGACACCAGTCAAAGCATGGTCTGAGCAGCAGCCGTTTATGTATGTTGGTTTCGATCATGTGATGGGCAC
CCAAGCACTGGAAGGGTTTTACAAACAGAATACTGCGGTAGGGGGTAAGTATTCGGTCCTCTATTTCTCTGAAGGATATG
TTAGTGATGCCCGCGGTGATACTTTTATCGAAGATATGACGCATCATGATAACTATCAGTTAGTCTCTTCTTTCTACACC
AAAGCGGATCGCGAGTCAGGCTATAAAGCAGCGCTCAATGCGGTAAAAAAAGACCCGGACATCGACTTTATCTACGCTTG
CTCAACAGATGTGGCTCTTGGTGCGGTTAAAGCGCTCAAGGAACTCAATCGCACTGATATTCTGATCAACGGTTGGGGCG
GTGGTACAGCTGAGCTAGAGGCGATCGAACGCGGTGAAATTGATGTCACGGTTATGCGTATGAACGATGATACGGGTATT
GCAATGGCAGAAGCCATTAAGTGGGATTTAGAAGGCAAATCTGTACCTATTGTCTATTCGGGCGATTTTGAAGTTGTGAC
AACGGAAGACGGTCAAGAAAAAATTGAGCGTTTGAAACAGCGCGCATTTAGATACTCGGATCGTTAA

Domains

Predicted by InterproScan.

Periplasmic binding protein domain (Peripla_BP_4)

(72-327)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxP Vibrio cholerae strain A1552

64.13

100

0.641

Multiple sequence alignment