Detailed information    

insolico Bioinformatically predicted

Overview

Name   cytR   Type   Regulator
Locus tag   GZN30_RS13910 Genome accession   NZ_AP019657
Coordinates   3079828..3080841 (+) Length   337 a.a.
NCBI ID   WP_269472807.1    Uniprot ID   -
Organism   Vibrio ponticus strain DSM 16217     
Function   promote competence gene expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 3074828..3085841
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GZN30_RS13895 - 3075038..3076312 (-) 1275 WP_075650057.1 malic enzyme-like NAD(P)-binding protein -
  GZN30_RS13900 rpmE 3076561..3076782 (-) 222 WP_075650058.1 50S ribosomal protein L31 -
  GZN30_RS13905 priA 3077232..3079433 (+) 2202 WP_075650059.1 primosomal protein N' -
  GZN30_RS13910 cytR 3079828..3080841 (+) 1014 WP_269472807.1 DNA-binding transcriptional regulator CytR Regulator
  GZN30_RS13915 - 3081017..3081559 (+) 543 WP_075650061.1 SPOR domain-containing protein -
  GZN30_RS13920 galE 3081897..3082913 (+) 1017 WP_075650067.1 UDP-glucose 4-epimerase GalE -
  GZN30_RS13925 rfaH 3083032..3083544 (+) 513 WP_075650062.1 transcription/translation regulatory transformer protein RfaH -
  GZN30_RS13930 tviB 3083675..3084952 (+) 1278 WP_075650063.1 Vi polysaccharide biosynthesis UDP-N-acetylglucosamine C-6 dehydrogenase TviB -

Sequence

Protein


Download         Length: 337 a.a.        Molecular weight: 37289.00 Da        Isoelectric Point: 6.7459

>NTDB_id=73135 GZN30_RS13910 WP_269472807.1 3079828..3080841(+) (cytR) [Vibrio ponticus strain DSM 16217]
MFMATMKDVAQLAGVSTATVSRALMNPEKVSSATRKRVEDAVLEAGYSPNSLARNLRRNESKTIIAIVPDICDPYYTEII
RGIEDAAMEHGYIVLLGDSAQQKKRENSFVNLVFTKQADGMLLLGTDLPFDVSKPEQKNLPPMVMACEFAPELELPTVHI
DNLTSAFEVVNYLTQLGHKRIAQISGPQDAALCQFRQQGYLQALRRAGITMNPAYSIHGNFSFEDGAKSVRQLLTLPEPP
TAIFCHNDAMAIGAIQEAKRLGLRVPQDLSVVGFDDIQFAQYCDPPLTTISQPRYEIGRQAMLMMLEILRGHDVRTGSRL
LETNLVVRKSAAPPRVI

Nucleotide


Download         Length: 1014 bp        

>NTDB_id=73135 GZN30_RS13910 WP_269472807.1 3079828..3080841(+) (cytR) [Vibrio ponticus strain DSM 16217]
ATTTTTATGGCGACAATGAAGGATGTTGCCCAGCTCGCAGGGGTTTCGACAGCGACAGTATCAAGGGCGCTGATGAATCC
TGAGAAAGTCTCTTCGGCTACGCGAAAACGTGTTGAAGATGCAGTTCTAGAAGCTGGATACTCACCAAACTCACTTGCGC
GCAATTTGCGCCGCAACGAATCAAAAACAATTATTGCGATTGTTCCAGACATTTGCGATCCCTACTATACCGAAATCATT
CGCGGTATTGAGGATGCGGCAATGGAGCACGGCTACATTGTTTTACTTGGTGACAGTGCTCAGCAGAAAAAACGCGAGAA
CTCCTTTGTTAACTTGGTTTTCACCAAGCAAGCAGATGGCATGCTACTACTCGGAACGGATCTACCTTTTGATGTGAGCA
AGCCTGAGCAGAAGAATTTGCCACCGATGGTCATGGCGTGTGAATTTGCTCCAGAGCTTGAGTTGCCAACCGTACACATT
GATAACCTTACCTCAGCGTTTGAAGTGGTGAATTACCTGACTCAGCTTGGTCATAAGCGTATTGCTCAGATTTCAGGTCC
GCAAGATGCTGCGCTGTGCCAGTTCCGCCAACAAGGTTACCTACAAGCGCTGCGCCGTGCGGGTATCACCATGAACCCGG
CTTACAGCATCCACGGTAATTTCAGTTTTGAAGATGGGGCGAAATCGGTTCGTCAATTGCTGACGTTGCCTGAACCACCG
ACGGCGATTTTCTGCCACAATGATGCGATGGCGATTGGTGCAATCCAAGAAGCCAAACGCCTTGGTCTACGTGTGCCACA
AGATTTATCGGTAGTGGGTTTTGATGATATTCAATTTGCTCAATACTGCGATCCACCGTTAACGACGATTTCTCAACCGC
GCTATGAGATTGGTCGCCAAGCGATGTTGATGATGCTGGAGATTTTACGTGGTCACGATGTGCGCACAGGCTCTCGCTTG
TTAGAGACCAACCTTGTCGTACGTAAAAGCGCCGCGCCGCCGCGAGTTATCTAA

Domains

Predicted by InterproScan.

Periplasmic binding protein-like domain (Peripla_BP_3)

(170-330)

Bacterial regulatory proteins, lacI family (LacI)

(5-50)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cytR Vibrio cholerae C6706

91.867

98.516

0.905
  cytR Vibrio parahaemolyticus RIMD 2210633

89.189

98.813

0.881

Multiple sequence alignment