Detailed information    

insolico Bioinformatically predicted

Overview

Name   priA   Type   Machinery gene
Locus tag   N5980_RS13980 Genome accession   NZ_CP104651
Coordinates   2871613..2873835 (+) Length   740 a.a.
NCBI ID   WP_261635094.1    Uniprot ID   -
Organism   Acinetobacter variabilis strain 2021CK-01005     
Function   DNA puliing through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2866613..2878835
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  N5980_RS13960 (N5980_13950) lnt 2867430..2868989 (+) 1560 WP_125278820.1 apolipoprotein N-acyltransferase -
  N5980_RS13965 (N5980_13955) - 2869070..2869405 (-) 336 WP_104426673.1 hypothetical protein -
  N5980_RS13970 (N5980_13960) gspG 2869690..2870187 (-) 498 WP_004781738.1 type II secretion system major pseudopilin GspG -
  N5980_RS13975 (N5980_13965) gspF 2870258..2871463 (-) 1206 WP_261635093.1 type II secretion system inner membrane protein GspF -
  N5980_RS13980 (N5980_13970) priA 2871613..2873835 (+) 2223 WP_261635094.1 primosomal protein N' Machinery gene
  N5980_RS13985 (N5980_13975) - 2873910..2875766 (+) 1857 WP_261635095.1 cation:proton antiporter -
  N5980_RS13990 (N5980_13980) hslO 2875817..2876692 (+) 876 WP_261635096.1 Hsp33 family molecular chaperone HslO -
  N5980_RS13995 (N5980_13985) - 2876798..2878020 (+) 1223 WP_122959108.1 IS3 family transposase -
  N5980_RS14000 (N5980_13990) - 2878221..2878670 (+) 450 WP_261635097.1 DUF2147 domain-containing protein -

Sequence

Protein


Download         Length: 740 a.a.        Molecular weight: 83736.65 Da        Isoelectric Point: 8.5518

>NTDB_id=731263 N5980_RS13980 WP_261635094.1 2871613..2873835(+) (priA) [Acinetobacter variabilis strain 2021CK-01005]
MPNSVPVTAPVYRVRVAVPVHLFDCFDYSLSQEQYQQAEVGARVAVSFGRQNLVGVITEKLPLDAPIDPSFKLKAITELL
DDRAIINSQVLSVLTWSAQYYQFPIGEVIQTALPTLLRQGKPYNLLARNWKLLDHEAEAKVRRSERQQEAYRILKLHPVG
TTENLLNLAGIETATLKALEKKGICECVLEAQDFSPQPVQLAQMPLTANAEQKHAIQQVLKYRKQYQAFLLDGLTGSGKT
EVYLQIMEQVLKQGKQVLVLVPEIGLTPQTISRFQSRFHCHIALLHSGLNDSKRLQAWQAAETGKASIVLGTRSAIYTPM
PNLGLIILDEEHDLSFKQQEGFRYHARDVALYRGHLQQCPVLLGSATPSIDSYALVQQGKMQVLELNQRAGTALMPKIHI
LDLKVAPKQHGISLHLIEEIKKRLAKKEQVLIFLNRRGYAPVLICGSCGWQAQCPNCDANFTVHRQPYQHLHCHHCGTIH
RMPEQCPQCQHQELATLGMGTGKVEEHLNELFPDFEVIRVDRDSTSRVGSWQKIYDKIQKSEPAILLGTQMLAKGHHFPY
VTLVAILDIDSGLLSVDFRATERTAQLIVQVAGRAGRGEHKGDVYLQTLRPDHALLNTLVTENYRAFAKQTLTERQIAQM
PPFRYAVLIRCESKDQAQNTEFLQKHAALLRQYPDLVLDIWGPIPAPMERKAGRYQSHMVLLSADRARLHYYVRSWWQNL
LQDKPSNMKLTLDIDPQELS

Nucleotide


Download         Length: 2223 bp        

>NTDB_id=731263 N5980_RS13980 WP_261635094.1 2871613..2873835(+) (priA) [Acinetobacter variabilis strain 2021CK-01005]
ATGCCAAATTCTGTTCCCGTTACTGCCCCTGTTTATCGTGTTCGTGTTGCAGTGCCGGTGCATCTGTTTGACTGTTTTGA
CTATAGCTTGAGTCAGGAACAATATCAGCAGGCAGAAGTGGGTGCCCGAGTCGCGGTTTCTTTTGGCCGGCAAAATCTGG
TCGGCGTAATTACTGAAAAATTACCGCTAGATGCTCCGATTGATCCCAGTTTCAAACTGAAAGCCATTACCGAGCTTTTA
GATGACCGTGCCATTATCAATTCCCAAGTTTTAAGTGTATTGACCTGGTCAGCACAGTATTACCAGTTTCCCATTGGGGA
AGTGATCCAGACTGCCTTGCCGACCTTATTGCGTCAGGGCAAACCTTATAACCTGCTGGCCCGAAACTGGAAATTGCTGG
ATCATGAGGCTGAAGCCAAAGTTCGCCGTTCCGAGAGGCAACAGGAAGCTTATCGGATTCTAAAACTGCATCCGGTGGGA
ACAACTGAGAATCTCTTAAATCTGGCCGGAATAGAAACAGCGACTTTAAAAGCACTCGAAAAAAAAGGGATTTGCGAATG
TGTACTGGAAGCACAGGATTTTAGCCCGCAACCTGTACAACTGGCCCAGATGCCATTAACGGCCAATGCGGAACAAAAGC
ATGCGATTCAGCAAGTGCTGAAATACCGCAAGCAATATCAGGCCTTTTTACTCGATGGCCTGACTGGCAGTGGCAAAACT
GAAGTCTATCTTCAGATCATGGAACAGGTACTCAAACAGGGCAAGCAGGTGCTGGTACTGGTGCCTGAAATCGGACTGAC
GCCACAAACCATTAGCCGCTTTCAATCCCGCTTCCATTGTCATATCGCCCTGCTTCACTCTGGCCTGAATGACAGTAAAC
GCTTACAAGCCTGGCAAGCCGCTGAAACCGGTAAAGCGTCCATTGTACTTGGCACCCGTTCTGCGATTTATACACCGATG
CCGAATCTAGGCCTGATCATTCTGGATGAAGAACATGACCTGTCTTTTAAACAGCAGGAAGGCTTTCGCTATCATGCCCG
TGATGTGGCATTGTACCGGGGACATTTACAGCAATGTCCAGTACTCTTGGGTTCGGCAACACCCAGCATTGACAGTTATG
CACTGGTGCAGCAAGGTAAAATGCAGGTACTGGAACTGAATCAACGCGCGGGTACAGCGCTAATGCCGAAAATCCATATT
CTGGATTTAAAAGTAGCGCCAAAGCAGCATGGTATCAGCCTGCATCTGATTGAAGAAATCAAAAAGCGCCTGGCTAAAAA
AGAACAGGTACTCATTTTCCTGAATCGTCGTGGTTATGCGCCCGTACTGATTTGTGGCAGTTGTGGCTGGCAGGCGCAGT
GTCCGAACTGTGATGCCAATTTCACTGTGCACCGGCAACCTTATCAACATCTGCATTGTCATCATTGCGGCACCATTCAT
CGTATGCCTGAACAGTGTCCGCAATGCCAGCATCAGGAGTTGGCCACTTTAGGCATGGGGACTGGAAAAGTTGAAGAACA
TCTGAATGAGCTTTTTCCAGATTTTGAAGTAATCCGGGTCGATCGCGACTCAACCAGTCGGGTCGGTAGTTGGCAAAAGA
TCTATGACAAGATTCAGAAAAGTGAGCCTGCGATTCTGCTCGGCACGCAGATGCTCGCCAAAGGCCATCATTTTCCTTAT
GTCACGCTGGTTGCAATTTTGGATATCGATTCTGGTCTTCTCAGTGTCGATTTCCGGGCCACAGAACGCACAGCACAATT
GATCGTACAGGTCGCAGGTCGTGCAGGACGTGGGGAACATAAAGGGGATGTATATTTACAGACCCTAAGACCTGATCATG
CGCTGCTGAATACCTTAGTCACTGAAAATTACCGTGCCTTTGCCAAGCAGACTTTGACCGAACGGCAAATCGCCCAGATG
CCTCCTTTTCGTTATGCCGTGCTGATTCGCTGTGAATCCAAAGATCAGGCACAAAATACCGAATTCTTACAGAAACATGC
TGCTCTGCTCAGGCAATATCCCGATCTGGTGCTGGACATCTGGGGTCCTATTCCTGCTCCGATGGAACGCAAGGCCGGAC
GCTATCAATCCCATATGGTGCTATTGTCCGCAGACCGTGCCCGTTTGCATTATTATGTCCGTAGCTGGTGGCAAAACCTG
TTACAAGATAAGCCATCCAATATGAAGCTGACACTGGACATTGATCCACAAGAACTCAGCTAA

Domains

Predicted by InterproScan.

3DNA-binding domain (3BD) (PriA_3primeBD)

(15-114)

Type III restriction enzyme, res subunit (ResIII)

(209-369)

Primosomal protein N C-terminal domain (PriA_C)

(642-736)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  priA Acinetobacter baumannii D1279779

72.605

100

0.727