Detailed information NTG0073126

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: GZN30_RS11065
• Genome accession: NZ_AP019657
• Coordinates: 2487163..2488146 (-)
• Length: 327 a.a.
• NCBI ID: WP_075649773.1
• Uniprot ID: -
• Organism: Vibrio ponticus strain DSM 16217
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 2482163..2493146

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
GZN30_RS11040	rimM	2482307..2482855 (-)	549	WP_075649777.1	ribosome maturation factor RimM	-
GZN30_RS11045	rpsP	2482882..2483130 (-)	249	WP_005593968.1	30S ribosomal protein S16	-
GZN30_RS11050	ffh	2483342..2484724 (-)	1383	WP_075649776.1	signal recognition particle protein	-
GZN30_RS11055	-	2484907..2485701 (+)	795	WP_075649775.1	inner membrane protein YpjD	-
GZN30_RS11060	-	2485817..2487091 (+)	1275	WP_075649774.1	HlyC/CorC family transporter	-
GZN30_RS11065	rpoS	2487163..2488146 (-)	984	WP_075649773.1	RNA polymerase sigma factor RpoS	Regulator
GZN30_RS11070	nlpD	2488221..2489141 (-)	921	WP_075649772.1	murein hydrolase activator NlpD	-
GZN30_RS11075	-	2489144..2489770 (-)	627	WP_075649771.1	protein-L-isoaspartate(D-aspartate) O-methyltransferase	-
GZN30_RS11080	surE	2489773..2490531 (-)	759	WP_075649770.1	5'/3'-nucleotidase SurE	-
GZN30_RS11085	truD	2490528..2491574 (-)	1047	WP_075649769.1	tRNA pseudouridine(13) synthase TruD	-
GZN30_RS11090	ispF	2491619..2492098 (-)	480	WP_075649768.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
GZN30_RS11095	ispD	2492102..2492809 (-)	708	WP_075649767.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-
GZN30_RS11100	ftsB	2492809..2493090 (-)	282	WP_075649766.1	cell division protein FtsB	-

Sequence

Protein

• Length: 327 a.a.
• Molecular weight: 37558.41 Da
• Isoelectric Point: 4.6599

>NTDB_id=73126 GZN30_RS11065 WP_075649773.1 2487163..2488146(-) (rpoS) [Vibrio ponticus strain DSM 16217]
MSISNAAAKVEEFDIESTESFESESQLDKKNTTSNETEKEEFEVSNKNLDATQLYLGEIGFSPLLTAEEEVLYARRALRG
DEAARKRMIESNLRLVVKISRRYSNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERALMNQTRTIR
LPIHVVKELNIYLRTARELSQKLDHEPTAEEIATQLDKPVDDVSKMLRLNERISSVDTPIGGDGEKALLDIIPDVKHSDP
EVSTQDDDIKSSLINWLDELNPKQKEVLARRFGLLGYEPSTLEEVGREINLTRERVRQIQVEGLRRLREILVKQGLSMEN
LFNVEDD

Nucleotide

• Length: 984 bp

>NTDB_id=73126 GZN30_RS11065 WP_075649773.1 2487163..2488146(-) (rpoS) [Vibrio ponticus strain DSM 16217]
ATGAGTATCAGCAACGCAGCAGCAAAAGTAGAAGAGTTTGATATCGAAAGCACGGAAAGCTTTGAGTCCGAATCACAACT
CGATAAAAAGAACACCACATCCAATGAAACTGAAAAAGAAGAGTTTGAAGTATCGAATAAAAACCTTGATGCGACACAAC
TTTATCTCGGGGAAATCGGTTTCTCACCACTGCTAACTGCAGAAGAAGAAGTGCTTTACGCACGACGAGCACTACGTGGC
GATGAAGCAGCACGTAAACGTATGATTGAGAGTAACTTACGTTTGGTTGTGAAAATTTCTCGTCGTTACAGTAATCGTGG
CTTAGCACTACTCGACTTAATTGAAGAGGGTAACCTCGGGCTAATTCGTGCGGTAGAGAAGTTTGATCCAGAGCGAGGCT
TCCGCTTTTCAACCTACGCAACATGGTGGATTCGTCAAACCATCGAGCGTGCATTGATGAATCAGACGCGTACGATTCGC
TTACCTATTCATGTCGTAAAAGAGCTTAATATTTATTTGCGTACCGCACGAGAGCTATCGCAAAAACTTGACCATGAACC
GACCGCAGAAGAGATTGCTACGCAACTGGATAAGCCAGTCGATGACGTAAGTAAAATGCTGCGTCTTAATGAGCGTATTA
GTTCTGTAGATACGCCAATCGGTGGGGACGGGGAAAAAGCACTGTTGGATATCATTCCCGATGTAAAACATTCGGATCCG
GAAGTGTCTACACAAGATGATGATATTAAGAGCTCGCTGATTAATTGGCTTGATGAACTTAACCCTAAGCAAAAAGAAGT
TTTAGCTCGCCGTTTTGGTTTGCTAGGTTATGAGCCATCAACGCTTGAAGAAGTAGGACGTGAAATTAACTTAACTCGTG
AGCGAGTGCGTCAAATTCAAGTAGAAGGTCTGCGTCGTCTGCGTGAGATCCTAGTAAAACAAGGCTTAAGCATGGAAAAC
CTGTTTAACGTCGAAGACGACTAA

Domains

Predicted by InterproScan.

• Sigma-70 region 2 (Sigma70_r2) (88-157)

• Sigma-70, region 4 (Sigma70_r4) (256-309)

• Sigma-70 region 3 (Sigma70_r3) (168-241)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (50-83)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	83.234	100	0.85