Detailed information    

insolico Bioinformatically predicted

Overview

Name   tonB2   Type   Machinery gene
Locus tag   N5980_RS02675 Genome accession   NZ_CP104651
Coordinates   547221..548078 (+) Length   285 a.a.
NCBI ID   WP_171065445.1    Uniprot ID   A0A8F6M5R8
Organism   Acinetobacter variabilis strain 2021CK-01005     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 542221..553078
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  N5980_RS02650 (N5980_02650) wrbA 543250..543858 (+) 609 WP_175968135.1 NAD(P)H:quinone oxidoreductase -
  N5980_RS02655 (N5980_02655) - 543898..544341 (-) 444 WP_179992782.1 hypothetical protein -
  N5980_RS02660 (N5980_02660) - 544739..545314 (-) 576 WP_175966106.1 xanthine phosphoribosyltransferase -
  N5980_RS02665 (N5980_02665) - 545405..546064 (-) 660 WP_376745074.1 DUF3108 domain-containing protein -
  N5980_RS02670 (N5980_02670) - 546272..546958 (-) 687 WP_175966102.1 hypothetical protein -
  N5980_RS02675 (N5980_02675) tonB2 547221..548078 (+) 858 WP_171065445.1 energy transducer TonB Machinery gene
  N5980_RS02680 (N5980_02680) - 548075..548476 (-) 402 Protein_515 hypothetical protein -
  N5980_RS02685 (N5980_02685) - 548698..548934 (-) 237 WP_175966100.1 antibiotic biosynthesis monooxygenase family protein -
  N5980_RS02690 (N5980_02690) ybeY 549027..549509 (-) 483 WP_175966099.1 rRNA maturation RNase YbeY -
  N5980_RS02695 (N5980_02695) - 549544..550620 (-) 1077 WP_175966097.1 PhoH family protein -
  N5980_RS02700 (N5980_02700) miaB 550659..552116 (-) 1458 WP_175966095.1 tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB -

Sequence

Protein


Download         Length: 285 a.a.        Molecular weight: 32744.16 Da        Isoelectric Point: 6.1603

>NTDB_id=731244 N5980_RS02675 WP_171065445.1 547221..548078(+) (tonB2) [Acinetobacter variabilis strain 2021CK-01005]
MPLVKAWWKDPIFNSAVFAAVILHVIFLTLEFGMPQDQESMTKEIAVSIRQTDEKIEHADFLAQTDQQGSGKFREAHRMS
SDMPAPLMEQKTGEEQQESPDMLQQQRELSFEEKVLMTTLSWQKQAEENQRKKMQEQLQSQFQAKAAMVASLEAQYLQRQ
QNFSRQQKIKTVDGIQSKQDVSAAYLEKFRQKVEFYGNRYYPDAAKQQNLAGEVRLMVILNQNGGIRAIRLIDSSGHSLL
DEAAKSSVRKAAPFGAFDAKMSDISELRIIRTWRFDPAEAEFEVR

Nucleotide


Download         Length: 858 bp        

>NTDB_id=731244 N5980_RS02675 WP_171065445.1 547221..548078(+) (tonB2) [Acinetobacter variabilis strain 2021CK-01005]
ATGCCTCTGGTCAAAGCCTGGTGGAAAGATCCAATTTTTAATAGCGCCGTATTTGCAGCTGTTATTTTGCATGTGATTTT
TCTCACGCTGGAATTTGGTATGCCACAAGATCAGGAGAGCATGACTAAAGAAATTGCAGTCAGTATTCGTCAAACTGATG
AAAAAATTGAGCATGCAGATTTTCTGGCTCAAACTGACCAGCAAGGTTCAGGTAAATTTCGTGAAGCACATCGTATGTCG
AGCGATATGCCTGCACCGTTGATGGAGCAAAAGACCGGAGAAGAGCAGCAAGAAAGTCCGGATATGTTACAGCAACAGCG
TGAATTAAGCTTTGAAGAAAAAGTGCTGATGACGACTTTAAGCTGGCAAAAACAGGCGGAAGAAAATCAGCGAAAAAAAA
TGCAGGAGCAGTTACAAAGTCAGTTTCAGGCCAAAGCTGCCATGGTAGCCAGTCTTGAAGCCCAATATCTGCAACGACAA
CAAAACTTCAGTCGTCAGCAAAAAATTAAAACCGTAGATGGCATCCAGTCCAAACAGGATGTCTCTGCTGCTTATCTGGA
AAAATTCCGTCAAAAAGTGGAGTTCTATGGTAACCGCTATTATCCAGACGCGGCCAAACAGCAGAATCTGGCAGGAGAGG
TGCGTTTGATGGTGATCTTGAACCAGAACGGCGGAATTCGTGCAATTCGGTTAATTGACAGTTCCGGACATAGCTTGCTA
GATGAAGCTGCAAAATCTTCAGTACGCAAGGCAGCACCGTTCGGAGCATTTGATGCCAAGATGTCGGATATTTCCGAGTT
ACGAATCATTCGAACCTGGCGTTTTGATCCGGCTGAAGCGGAATTTGAGGTGCGTTAA

Domains

Predicted by InterproScan.

Gram-negative bacterial TonB protein C-terminal (TonB_C)

(198-275)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  tonB2 Acinetobacter baumannii D1279779

73.835

97.895

0.723