Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxS   Type   Regulator
Locus tag   GZN30_RS10865 Genome accession   NZ_AP019657
Coordinates   2450327..2450845 (-) Length   172 a.a.
NCBI ID   WP_075652689.1    Uniprot ID   -
Organism   Vibrio ponticus strain DSM 16217     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 2445327..2455845
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GZN30_RS10840 metC 2445845..2447035 (+) 1191 WP_075652294.1 cystathionine beta-lyase -
  GZN30_RS10845 - 2447217..2448341 (+) 1125 WP_075652293.1 diguanylate cyclase -
  GZN30_RS10850 - 2448363..2448659 (-) 297 WP_075652292.1 hypothetical protein -
  GZN30_RS10860 - 2449788..2450264 (+) 477 WP_075652690.1 RDD family protein -
  GZN30_RS10865 luxS 2450327..2450845 (-) 519 WP_075652689.1 S-ribosylhomocysteine lyase Regulator
  GZN30_RS10870 - 2450863..2451474 (-) 612 WP_075652688.1 hypothetical protein -
  GZN30_RS10875 gshA 2451477..2453045 (-) 1569 WP_075652687.1 glutamate--cysteine ligase -

Sequence

Protein


Download         Length: 172 a.a.        Molecular weight: 18961.62 Da        Isoelectric Point: 4.5082

>NTDB_id=73120 GZN30_RS10865 WP_075652689.1 2450327..2450845(-) (luxS) [Vibrio ponticus strain DSM 16217]
MPLLDSFTVDHTRMNAPAVRVAKTMTTPKGDTITVFDLRFTAPNKDILSEKGIHTLEHLYAGFMRNHLNGDSVEIIDISP
MGCRTGFYMSLIGAPDEQQVASAWLTAMQDVLKVEDQNKIPELNEYQCGTAAMHSLDEAKQIAEAIIAAGISVNKNDELA
LPESMLNELRVD

Nucleotide


Download         Length: 519 bp        

>NTDB_id=73120 GZN30_RS10865 WP_075652689.1 2450327..2450845(-) (luxS) [Vibrio ponticus strain DSM 16217]
ATGCCATTACTAGATAGCTTTACCGTTGATCACACGCGCATGAATGCGCCAGCGGTACGTGTAGCAAAAACCATGACTAC
GCCTAAGGGTGACACCATTACTGTGTTTGATCTGCGTTTTACTGCACCGAACAAAGATATTTTGTCAGAAAAGGGAATTC
ATACTCTTGAGCACCTGTATGCTGGTTTTATGCGGAATCACTTAAATGGTGATAGCGTTGAGATCATTGATATTTCACCG
ATGGGTTGCCGTACTGGTTTCTACATGAGCTTGATTGGTGCACCTGATGAGCAGCAAGTAGCAAGTGCGTGGCTGACCGC
AATGCAGGATGTATTGAAAGTGGAAGATCAAAATAAGATCCCTGAGCTAAATGAATACCAATGTGGTACCGCGGCAATGC
ATTCACTCGATGAAGCAAAGCAAATTGCTGAAGCGATCATCGCTGCGGGTATTTCGGTTAACAAAAACGATGAATTGGCG
TTGCCAGAATCGATGCTTAACGAATTACGCGTTGATTGA

Domains

Predicted by InterproScan.

S-Ribosylhomocysteinase (LuxS) (LuxS)

(4-154)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxS Vibrio cholerae strain A1552

89.474

99.419

0.89

Multiple sequence alignment