Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   N5855_RS03495 Genome accession   NZ_CP104629
Coordinates   755663..756292 (+) Length   209 a.a.
NCBI ID   WP_000839153.1    Uniprot ID   A0A9Q6Y251
Organism   Escherichia coli strain AHM21C2872I     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 750663..761292
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  N5855_RS03475 (N5855_03470) ycbZ 751047..752807 (-) 1761 WP_021556661.1 Lon protease family protein -
  N5855_RS03480 (N5855_03475) matP 752993..753445 (+) 453 WP_000877158.1 macrodomain Ter protein MatP -
  N5855_RS03485 (N5855_03480) ompA 753523..754578 (-) 1056 WP_000750414.1 porin OmpA -
  N5855_RS03490 (N5855_03485) sulA 754935..755444 (-) 510 WP_000288706.1 SOS-induced cell division inhibitor SulA -
  N5855_RS03495 (N5855_03490) sxy/tfoX 755663..756292 (+) 630 WP_000839153.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  N5855_RS03500 (N5855_03495) yccS 756255..758417 (-) 2163 WP_000323868.1 YccS family putative transporter -
  N5855_RS03505 (N5855_03500) yccF 758427..758873 (-) 447 WP_001261235.1 YccF domain-containing protein -
  N5855_RS03510 (N5855_03505) helD 758996..761050 (+) 2055 WP_000420536.1 DNA helicase IV -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24147.02 Da        Isoelectric Point: 9.2180

>NTDB_id=731047 N5855_RS03495 WP_000839153.1 755663..756292(+) (sxy/tfoX) [Escherichia coli strain AHM21C2872I]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=731047 N5855_RS03495 WP_000839153.1 755663..756292(+) (sxy/tfoX) [Escherichia coli strain AHM21C2872I]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGTAGTTACAGCCTGACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTATATCTTCGGGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAACATCCGCCTGTCTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGTGCCATTATCGGCATTCATGAAGCTGCGCTCCCGGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

100

100

1