Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   N5857_RS16405 Genome accession   NZ_CP104627
Coordinates   3330666..3331262 (-) Length   198 a.a.
NCBI ID   WP_004179217.1    Uniprot ID   A0A085DH59
Organism   Klebsiella pneumoniae strain AHM21C2836KI     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 3325666..3336262
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  N5857_RS16390 (N5857_16385) helD 3325874..3327928 (-) 2055 WP_200541491.1 DNA helicase IV -
  N5857_RS16395 (N5857_16390) - 3328053..3328499 (+) 447 WP_002898425.1 YccF domain-containing protein -
  N5857_RS16400 (N5857_16395) yccS 3328517..3330652 (+) 2136 WP_049118083.1 YccS family putative transporter -
  N5857_RS16405 (N5857_16400) sxy/tfoX 3330666..3331262 (-) 597 WP_004179217.1 TfoX/Sxy family DNA transformation protein Regulator
  N5857_RS16410 (N5857_16405) - 3331353..3331568 (+) 216 WP_009485781.1 hypothetical protein -
  N5857_RS16415 (N5857_16410) sulA 3331611..3332120 (+) 510 WP_004179215.1 SOS-induced cell division inhibitor SulA -
  N5857_RS16420 (N5857_16415) ompA 3332473..3333543 (+) 1071 WP_002898408.1 porin OmpA -
  N5857_RS16425 (N5857_16420) matP 3333676..3334128 (-) 453 WP_002898404.1 macrodomain Ter protein MatP -
  N5857_RS16430 (N5857_16425) - 3334314..3336071 (+) 1758 WP_128206610.1 Lon protease family protein -

Sequence

Protein


Download         Length: 198 a.a.        Molecular weight: 22516.11 Da        Isoelectric Point: 10.0350

>NTDB_id=731035 N5857_RS16405 WP_004179217.1 3330666..3331262(-) (sxy/tfoX) [Klebsiella pneumoniae strain AHM21C2836KI]
MRKLVCPRLPQFQACVSPLGQLHTRPLFGGYSLAIDDTVFAMVAEGNIYLKACEQSAAYRVEHRNPLLTLRRHGRIVPLK
YYQIDDTLWRDEQQLFRLSLLSWQSAQREKNCRRASGRLKDLPNISFHMELQLIHAGIPDVRTLREVGAQEAWLRLRVNN
ASLSLSVLLALEGAIAGVHAAALPTPRRQELLEWAATR

Nucleotide


Download         Length: 597 bp        

>NTDB_id=731035 N5857_RS16405 WP_004179217.1 3330666..3331262(-) (sxy/tfoX) [Klebsiella pneumoniae strain AHM21C2836KI]
ATGAGAAAACTAGTTTGTCCGCGGCTCCCGCAATTTCAGGCCTGCGTCTCACCGCTGGGTCAACTGCATACTCGTCCGCT
CTTTGGCGGCTACAGCCTGGCTATTGATGATACGGTGTTTGCGATGGTGGCCGAGGGGAACATTTATCTGAAGGCCTGCG
AGCAGAGCGCTGCTTATCGGGTGGAACATCGTAATCCTCTGTTAACGCTGCGCCGACACGGCCGCATAGTGCCGCTGAAG
TATTATCAAATTGACGACACTTTATGGCGCGATGAGCAGCAGCTTTTTCGGCTATCGCTACTGTCGTGGCAGAGTGCGCA
GCGCGAAAAGAACTGCCGACGGGCGTCGGGCCGCCTGAAGGATTTACCCAATATCAGCTTTCATATGGAATTGCAGCTGA
TTCACGCGGGCATACCGGACGTTAGGACGTTGCGGGAAGTTGGTGCGCAGGAGGCATGGCTGAGGCTACGCGTAAATAAT
GCTTCTTTATCGCTGAGCGTATTGCTGGCGCTGGAGGGGGCGATTGCCGGGGTACATGCCGCCGCGCTCCCGACGCCACG
GCGTCAGGAGCTTCTCGAATGGGCGGCTACCCGGTAG

Domains

Predicted by InterproScan.

TfoX C-terminal domain (TfoX_C)

(117-194)

TfoX N-terminal domain (TfoX_N)

(16-105)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A085DH59

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

51.269

99.495

0.51