Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxP   Type   Regulator
Locus tag   GZK95_RS18780 Genome accession   NZ_AP019655
Coordinates   893212..894318 (-) Length   368 a.a.
NCBI ID   WP_075715240.1    Uniprot ID   -
Organism   Vibrio panuliri strain JCM 19500     
Function   autoinducer sensor (predicted from homology)   
Competence regulation

Genomic Context

Location: 888212..899318
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GZK95_RS18765 glpD 888418..889905 (+) 1488 WP_075715102.1 glycerol-3-phosphate dehydrogenase -
  GZK95_RS18770 - 890006..890665 (+) 660 WP_075710880.1 PilZ domain-containing protein -
  GZK95_RS18775 luxQ 890630..893212 (-) 2583 WP_075715100.1 quorum-sensing autoinducer 2 sensor kinase/phosphatase LuxQ -
  GZK95_RS18780 luxP 893212..894318 (-) 1107 WP_075715240.1 autoinducer 2-binding periplasmic protein LuxP Regulator
  GZK95_RS18785 - 894428..894751 (-) 324 WP_075715098.1 GIY-YIG nuclease family protein -
  GZK95_RS18790 - 894738..895394 (-) 657 WP_075715096.1 YceH family protein -
  GZK95_RS18795 - 895424..895618 (-) 195 WP_075710888.1 hypothetical protein -
  GZK95_RS18800 - 895808..896128 (+) 321 WP_075710890.1 DUF496 family protein -
  GZK95_RS18805 - 896403..896654 (+) 252 WP_075710892.1 YgjV family protein -
  GZK95_RS22150 - 896809..896967 (+) 159 WP_170296243.1 hypothetical protein -
  GZK95_RS18810 elbB 897057..897707 (+) 651 WP_075715094.1 isoprenoid biosynthesis glyoxalase ElbB -
  GZK95_RS18815 glpK 897760..899262 (-) 1503 WP_139315064.1 glycerol kinase GlpK -

Sequence

Protein


Download         Length: 368 a.a.        Molecular weight: 41609.82 Da        Isoelectric Point: 5.0120

>NTDB_id=73103 GZK95_RS18780 WP_075715240.1 893212..894318(-) (luxP) [Vibrio panuliri strain JCM 19500]
MHNSALLPFLFLSASLSAPVLAQNAQILNGYWQYNEYLDANPAQKKLTQQLSNAVRERPIPLKARQGKPISISVVYPGQQ
ISDYWVRNIKAFEARMDELNIRYELNQVFTRPNLDSRQQSLSLLEAVQNNADYLIFTLDTTRHRKFIEHVMSSTDTKLIL
QNITTPVRAWSQQQPFMYVGFDHMLGTQAIEQYYKAKMAKGSKYSVLYFSEGYISDARGDTFIESMTHHDSYQLASSFYT
EATRESGYSATIGAVEKDPDLDFIYACSTDVALGAVEALSELKRSDIAINGWGGGTAELDAIERGDLDVTVMRMNDDTGV
AMAEAIKWDLEDKIVPTVYSGDFELVTSGDSTQKIERLKRRAFRYSDQ

Nucleotide


Download         Length: 1107 bp        

>NTDB_id=73103 GZK95_RS18780 WP_075715240.1 893212..894318(-) (luxP) [Vibrio panuliri strain JCM 19500]
ATGCACAACTCAGCTTTGCTACCATTCCTTTTTCTATCTGCTTCTCTTTCAGCTCCCGTTTTGGCACAAAATGCCCAGAT
ACTAAATGGATACTGGCAGTACAACGAGTATCTCGATGCTAACCCCGCGCAAAAGAAACTGACACAGCAGTTGTCAAATG
CGGTGCGAGAAAGACCTATTCCTTTGAAAGCGAGACAGGGAAAACCGATCTCCATTTCTGTTGTTTACCCGGGGCAGCAA
ATCTCGGACTATTGGGTAAGGAACATCAAGGCGTTTGAAGCTCGTATGGATGAGCTCAACATCCGCTATGAACTCAATCA
AGTGTTTACTCGACCTAACTTAGATTCCAGACAACAAAGTCTGTCGCTACTAGAAGCGGTGCAAAACAACGCCGATTACT
TAATTTTCACCCTTGATACCACACGCCATCGGAAGTTTATCGAACACGTGATGAGCTCAACCGATACCAAGTTGATCTTG
CAAAATATCACCACGCCAGTTCGTGCATGGTCGCAACAACAACCGTTTATGTACGTTGGCTTTGACCATATGCTCGGTAC
TCAGGCGATTGAACAATACTACAAAGCGAAAATGGCGAAAGGGAGTAAATACTCAGTCCTCTATTTCTCTGAAGGGTATA
TTAGCGACGCTCGCGGAGATACCTTTATCGAAAGTATGACGCATCATGATAGCTATCAGCTAGCGTCATCATTTTACACT
GAAGCGACACGTGAATCTGGTTACAGCGCAACCATAGGTGCGGTAGAGAAAGACCCTGATCTCGACTTTATTTATGCGTG
CTCAACCGATGTCGCATTGGGCGCGGTAGAAGCATTGAGCGAGCTTAAGCGCAGCGATATCGCCATTAATGGTTGGGGTG
GCGGCACCGCGGAGCTGGATGCGATAGAGCGTGGGGATCTGGATGTCACAGTGATGCGCATGAATGATGACACCGGCGTA
GCGATGGCGGAGGCGATTAAGTGGGATCTTGAAGATAAAATCGTGCCGACCGTATATTCGGGCGATTTTGAGCTGGTGAC
TTCTGGTGATTCAACACAGAAGATCGAACGTCTCAAGCGACGCGCATTTAGGTACTCAGACCAATAA

Domains

Predicted by InterproScan.

Periplasmic binding protein domain (Peripla_BP_4)

(72-325)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxP Vibrio cholerae strain A1552

63.912

98.641

0.63

Multiple sequence alignment