Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   N5856_RS07555 Genome accession   NZ_CP104613
Coordinates   1593574..1594203 (+) Length   209 a.a.
NCBI ID   WP_001612760.1    Uniprot ID   A0A377CFT3
Organism   Escherichia coli strain AHM8C212RI     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 1588574..1599203
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  N5856_RS07535 (N5856_07505) ycbZ 1588964..1590724 (-) 1761 WP_094318038.1 Lon protease family protein -
  N5856_RS07540 (N5856_07510) matP 1590910..1591362 (+) 453 WP_000877158.1 macrodomain Ter protein MatP -
  N5856_RS07545 (N5856_07515) ompA 1591437..1592489 (-) 1053 WP_032223517.1 porin OmpA -
  N5856_RS07550 (N5856_07520) sulA 1592846..1593355 (-) 510 WP_284632367.1 SOS-induced cell division inhibitor SulA -
  N5856_RS07555 (N5856_07525) sxy/tfoX 1593574..1594203 (+) 630 WP_001612760.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  N5856_RS07560 (N5856_07530) yccS 1594166..1596328 (-) 2163 WP_000875045.1 YccS family putative transporter -
  N5856_RS07565 (N5856_07535) yccF 1596338..1596784 (-) 447 WP_001261235.1 YccF domain-containing protein -
  N5856_RS07570 (N5856_07540) helD 1596907..1598961 (+) 2055 WP_001558928.1 DNA helicase IV -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24146.03 Da        Isoelectric Point: 9.4081

>NTDB_id=730981 N5856_RS07555 WP_001612760.1 1593574..1594203(+) (sxy/tfoX) [Escherichia coli strain AHM8C212RI]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSNGELYLRACEQSAQYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=730981 N5856_RS07555 WP_001612760.1 1593574..1594203(+) (sxy/tfoX) [Escherichia coli strain AHM8C212RI]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGTAGTTACAGCCTGACCGTTGACGACACGGTATTTGCGATGGTTTCTAATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAACATCCGCCTGTCTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGTGCCATTATCGGCATTCATGAAGCTGCGCTCCCGGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A377CFT3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

99.522

100

0.995