Detailed information NTG0073098

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: GZK95_RS12905
• Genome accession: NZ_AP019654
• Coordinates: 2832390..2833373 (-)
• Length: 327 a.a.
• NCBI ID: WP_075706977.1
• Uniprot ID: A0A1Q9HLC1
• Organism: Vibrio panuliri strain JCM 19500
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 2827390..2838373

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
GZK95_RS12880	rimM	2827506..2828054 (-)	549	WP_075715362.1	ribosome maturation factor RimM	-
GZK95_RS12885	rpsP	2828082..2828330 (-)	249	WP_005593968.1	30S ribosomal protein S16	-
GZK95_RS12890	ffh	2828542..2829924 (-)	1383	WP_075706971.1	signal recognition particle protein	-
GZK95_RS12895	-	2830107..2830901 (+)	795	WP_075715361.1	inner membrane protein YpjD	-
GZK95_RS12900	-	2831029..2832303 (+)	1275	WP_075706975.1	HlyC/CorC family transporter	-
GZK95_RS12905	rpoS	2832390..2833373 (-)	984	WP_075706977.1	RNA polymerase sigma factor RpoS	Regulator
GZK95_RS12910	-	2833447..2834367 (-)	921	WP_075715360.1	peptidoglycan DD-metalloendopeptidase family protein	-
GZK95_RS12915	-	2834370..2834996 (-)	627	WP_075706981.1	protein-L-isoaspartate(D-aspartate) O-methyltransferase	-
GZK95_RS12920	surE	2834999..2835757 (-)	759	WP_075715359.1	5'/3'-nucleotidase SurE	-
GZK95_RS12925	truD	2835754..2836800 (-)	1047	WP_075706985.1	tRNA pseudouridine(13) synthase TruD	-
GZK95_RS12930	ispF	2836834..2837313 (-)	480	WP_075715358.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
GZK95_RS12935	ispD	2837317..2838024 (-)	708	WP_075706989.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-
GZK95_RS12940	ftsB	2838026..2838307 (-)	282	WP_075706991.1	cell division protein FtsB	-

Sequence

Protein

• Length: 327 a.a.
• Molecular weight: 37596.56 Da
• Isoelectric Point: 4.6470

>NTDB_id=73098 GZK95_RS12905 WP_075706977.1 2832390..2833373(-) (rpoS) [Vibrio panuliri strain JCM 19500]
MSISNTAAKVQEFDIENMEGFDVETQLEQKSTPVNETSKEEYEVSNKNLDATQLYLGEIGFSPLLTAEEEVLYARRALRG
DEAARKRMIESNLRLVVKISRRYSNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERALMNQTRTIR
LPIHVVKELNIYLRTARELSQKLDHEPTAEEIATQLDKPVDDVSKMLRLNERISSVDTPIGGDGEKALLDIIPDVKHSDP
EVSTQDDDIKDSLINWLDELNPKQKEVLARRFGLLGYEPSTLEEVGREINLTRERVRQIQVEGLRRLREILVKQGLSMEN
LFSVEDD

Nucleotide

• Length: 984 bp

>NTDB_id=73098 GZK95_RS12905 WP_075706977.1 2832390..2833373(-) (rpoS) [Vibrio panuliri strain JCM 19500]
ATGAGTATCAGCAACACAGCAGCAAAAGTACAAGAGTTTGATATTGAAAACATGGAAGGTTTCGATGTCGAGACACAACT
CGAACAAAAATCCACACCAGTAAATGAGACCAGCAAAGAAGAGTACGAGGTATCGAATAAGAATCTCGATGCGACTCAGC
TTTATCTTGGCGAAATTGGTTTCTCTCCACTCCTCACTGCAGAAGAAGAAGTGCTATATGCACGTCGCGCTTTGCGTGGT
GATGAAGCGGCGCGTAAGCGTATGATAGAGAGTAACCTGCGTTTAGTGGTTAAAATTTCTCGTCGCTACAGTAATCGAGG
ACTCGCTCTACTTGATTTAATTGAAGAGGGTAACCTTGGCTTGATTCGAGCGGTCGAAAAATTTGACCCCGAGAGAGGTT
TCCGCTTTTCAACTTACGCCACTTGGTGGATCCGTCAAACGATTGAGCGTGCGCTAATGAACCAAACTCGCACCATTCGC
TTACCGATTCACGTGGTGAAAGAGCTTAATATCTACTTGCGAACCGCGCGCGAGCTATCGCAAAAGCTTGATCATGAGCC
AACCGCAGAAGAGATTGCCACACAACTCGATAAGCCAGTTGACGATGTCAGCAAAATGCTACGTCTAAATGAGCGTATCA
GTTCAGTGGATACACCAATTGGTGGTGATGGTGAGAAAGCACTGTTAGATATCATTCCTGATGTGAAGCACTCAGATCCA
GAAGTGTCGACGCAAGATGACGATATCAAGGATTCACTAATTAATTGGCTTGATGAGCTAAATCCAAAGCAAAAAGAAGT
TTTGGCACGCCGTTTTGGTTTGCTTGGATATGAACCATCAACGCTTGAAGAAGTCGGTAGAGAAATCAACCTGACTCGTG
AGCGAGTACGCCAAATTCAAGTTGAAGGGTTACGTCGCCTACGTGAAATCCTAGTTAAGCAAGGTTTGAGTATGGAAAAC
TTGTTTAGCGTCGAAGACGATTAA

Domains

Predicted by InterproScan.

• Sigma-70 region 3 (Sigma70_r3) (168-241)

• Sigma-70, region 4 (Sigma70_r4) (256-309)

• Sigma-70 region 2 (Sigma70_r2) (88-157)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (50-83)

3D structure

• AlphaFold DB: A0A1Q9HLC1

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	82.635	100	0.844