Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   N5B57_RS14960 Genome accession   NZ_CP104595
Coordinates   3031540..3032169 (-) Length   209 a.a.
NCBI ID   WP_000839153.1    Uniprot ID   A0A9Q6Y251
Organism   Escherichia coli strain EC9952     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 3026540..3037169
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  N5B57_RS14945 (N5B57_14915) helD 3026782..3028836 (-) 2055 WP_001377983.1 DNA helicase IV -
  N5B57_RS14950 (N5B57_14920) yccF 3028959..3029405 (+) 447 WP_001261231.1 YccF domain-containing protein -
  N5B57_RS14955 (N5B57_14925) yccS 3029415..3031577 (+) 2163 WP_000875044.1 YccS family putative transporter -
  N5B57_RS14960 (N5B57_14930) sxy/tfoX 3031540..3032169 (-) 630 WP_000839153.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  N5B57_RS14965 (N5B57_14935) sulA 3032388..3032897 (+) 510 WP_000288710.1 SOS-induced cell division inhibitor SulA -
  N5B57_RS14970 (N5B57_14940) ompA 3033254..3034294 (+) 1041 WP_000750416.1 porin OmpA -
  N5B57_RS14975 (N5B57_14945) matP 3034370..3034822 (-) 453 WP_000877161.1 macrodomain Ter protein MatP -
  N5B57_RS14980 (N5B57_14950) ycbZ 3035008..3036768 (+) 1761 WP_000156526.1 AAA family ATPase -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24147.02 Da        Isoelectric Point: 9.2180

>NTDB_id=730922 N5B57_RS14960 WP_000839153.1 3031540..3032169(-) (sxy/tfoX) [Escherichia coli strain EC9952]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=730922 N5B57_RS14960 WP_000839153.1 3031540..3032169(-) (sxy/tfoX) [Escherichia coli strain EC9952]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGCAGTTACAGCCTGACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAACATCCGCCTGTCTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGTGCCATTATCGGCATTCATGAAGCTGCGCTCCCGGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

100

100

1