Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxS   Type   Regulator
Locus tag   GZK95_RS12705 Genome accession   NZ_AP019654
Coordinates   2795700..2796227 (-) Length   175 a.a.
NCBI ID   WP_075716026.1    Uniprot ID   -
Organism   Vibrio panuliri strain JCM 19500     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 2790700..2801227
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GZK95_RS12680 - 2791234..2791674 (-) 441 WP_075709048.1 MarR family winged helix-turn-helix transcriptional regulator -
  GZK95_RS12685 - 2792148..2793380 (+) 1233 WP_075716027.1 dicarboxylate/amino acid:cation symporter -
  GZK95_RS12690 metC 2793403..2794593 (+) 1191 WP_075709046.1 cystathionine beta-lyase -
  GZK95_RS12700 - 2795164..2795640 (+) 477 WP_075709045.1 RDD family protein -
  GZK95_RS12705 luxS 2795700..2796227 (-) 528 WP_075716026.1 S-ribosylhomocysteine lyase Regulator
  GZK95_RS12710 - 2796245..2796856 (-) 612 WP_075716025.1 hypothetical protein -
  GZK95_RS12715 gshA 2796859..2798427 (-) 1569 WP_075716024.1 glutamate--cysteine ligase -

Sequence

Protein


Download         Length: 175 a.a.        Molecular weight: 19390.21 Da        Isoelectric Point: 4.8364

>NTDB_id=73092 GZK95_RS12705 WP_075716026.1 2795700..2796227(-) (luxS) [Vibrio panuliri strain JCM 19500]
MPLLDSFTVDHTRMNAPAVRVAKTMTTPKGDTITVFDLRFTAPNKDILSERGIHTLEHLYAGFMRNHLNGDSVEIIDISP
MGCRTGFYMSLIGTPDEQQVAAAWLAAMQDVLKVEDQNKIPELNEYQCGTAAMHSLDEAKQIAQAIIAAGISVNKNDELA
LPEAMLKELRVDQYK

Nucleotide


Download         Length: 528 bp        

>NTDB_id=73092 GZK95_RS12705 WP_075716026.1 2795700..2796227(-) (luxS) [Vibrio panuliri strain JCM 19500]
ATGCCATTACTAGATAGCTTTACTGTTGATCACACACGTATGAATGCACCAGCGGTTCGAGTCGCCAAAACCATGACGAC
GCCAAAAGGTGATACCATCACGGTCTTTGACTTACGCTTTACCGCACCAAACAAAGATATCTTGTCTGAGAGAGGGATTC
ATACGCTAGAGCACCTATATGCTGGGTTTATGCGTAATCATTTGAATGGTGATAGTGTAGAAATTATCGACATCTCACCA
ATGGGGTGCCGTACCGGCTTTTATATGAGTTTGATTGGTACACCTGACGAACAGCAAGTTGCAGCAGCTTGGCTTGCGGC
AATGCAAGATGTACTCAAGGTCGAAGATCAAAACAAGATTCCTGAACTTAACGAGTATCAATGTGGTACAGCAGCGATGC
ACTCATTAGATGAAGCTAAGCAAATCGCACAGGCAATTATTGCTGCGGGTATCTCGGTTAACAAAAATGATGAGCTCGCT
TTGCCAGAAGCGATGTTGAAAGAACTGCGTGTTGATCAGTACAAGTAA

Domains

Predicted by InterproScan.

S-Ribosylhomocysteinase (LuxS) (LuxS)

(4-154)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxS Vibrio cholerae strain A1552

88.889

97.714

0.869

Multiple sequence alignment