Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFA   Type   Machinery gene
Locus tag   P3U19_RS03765 Genome accession   NZ_CP120128
Coordinates   782633..783715 (+) Length   360 a.a.
NCBI ID   WP_043044667.1    Uniprot ID   -
Organism   Staphylococcus aureus strain Dog049     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 777633..788715
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  P3U19_RS03745 (P3U19_03745) gdpS 778010..779080 (-) 1071 WP_072399183.1 GGDEF domain-containing protein GdpS -
  P3U19_RS03750 (P3U19_03750) - 779398..780453 (+) 1056 WP_000258150.1 glycosyltransferase family 4 protein -
  P3U19_RS03755 (P3U19_03755) - 780618..781259 (-) 642 WP_000192949.1 YigZ family protein -
  P3U19_RS03760 (P3U19_03760) fakB1 781403..782269 (+) 867 WP_000686344.1 fatty acid kinase binding subunit FakB1 -
  P3U19_RS03765 (P3U19_03765) comFA 782633..783715 (+) 1083 WP_043044667.1 DEAD/DEAH box helicase Machinery gene
  P3U19_RS03770 (P3U19_03770) - 783708..784382 (+) 675 WP_001057965.1 ComF family protein -
  P3U19_RS03775 (P3U19_03775) hpf 784443..785015 (+) 573 WP_000617735.1 ribosome hibernation-promoting factor, HPF/YfiA family -
  P3U19_RS03780 (P3U19_03780) secA 785429..787960 (+) 2532 WP_000506531.1 preprotein translocase subunit SecA -
  P3U19_RS03785 (P3U19_03785) - 788002..788100 (+) 99 WP_031789464.1 hypothetical protein -

Sequence

Protein


Download         Length: 360 a.a.        Molecular weight: 42111.61 Da        Isoelectric Point: 9.7626

>NTDB_id=730893 P3U19_RS03765 WP_043044667.1 782633..783715(+) (comFA) [Staphylococcus aureus strain Dog049]
MDNVTRYKITESSQSSSQAYYHLSFELSEQQSYASEHIVRAIRKRQTILLYAVTGAGKTEMMFQGIQYARIQGDNIAIVS
PRVDVIVEISKRIKDAFLNEDIDILHQQSRQQFEGHFVVCTVHQLYRFKQHFDTIFIDEVDAFPLSMDKNLQQALKSSSK
VEHATIYMTATPPKQLLSEIPHENIIKLPARFHKKSLPVPKYRYFKLNNNKIQKMLYRILQDQINNQRYTLVFFNNIETM
IKTFSVYKQKITKLTYVHSEDVFRFEKVEQLRNGHFDVIFTTTILERGFTMANLDVVVIDAHQYTQEALIQIAGRVGRKL
ECPTGKVLFFHEGVSMNMIQAKKEIQRMNKLALKRGWIDE

Nucleotide


Download         Length: 1083 bp        

>NTDB_id=730893 P3U19_RS03765 WP_043044667.1 782633..783715(+) (comFA) [Staphylococcus aureus strain Dog049]
ATGGATAATGTAACAAGATATAAAATAACAGAGAGTTCGCAAAGTTCATCACAAGCATATTATCATCTCTCATTTGAATT
GTCGGAACAGCAGTCTTATGCCTCAGAACATATTGTTCGAGCCATTAGAAAGAGACAAACGATTTTGTTATATGCCGTAA
CAGGTGCAGGTAAGACAGAAATGATGTTTCAAGGCATTCAATATGCAAGAATACAGGGAGATAATATAGCTATTGTGTCA
CCACGTGTAGATGTTATTGTAGAAATTAGTAAACGTATTAAAGACGCATTTCTTAATGAAGATATAGACATACTACACCA
GCAATCAAGACAACAATTTGAAGGGCATTTTGTTGTATGCACAGTGCATCAACTTTACCGATTCAAACAGCACTTTGATA
CTATTTTTATTGATGAAGTCGATGCCTTTCCTTTATCAATGGATAAAAATCTACAACAAGCATTGAAGTCATCTTCTAAA
GTTGAACATGCAACAATTTATATGACAGCAACACCACCGAAACAACTTCTGTCAGAGATTCCCCACGAAAATATAATTAA
ATTGCCAGCTCGCTTTCATAAAAAATCACTTCCAGTTCCTAAATATCGTTATTTCAAACTTAATAATAATAAGATTCAGA
AAATGTTATACCGAATTTTACAAGATCAAATTAATAATCAACGTTATACACTGGTGTTTTTTAACAATATAGAAACAATG
ATTAAAACATTTTCGGTTTATAAGCAGAAAATTACTAAATTAACATACGTCCATAGCGAGGATGTTTTTCGCTTTGAAAA
AGTTGAACAATTAAGGAATGGACATTTCGATGTCATTTTTACTACGACAATATTAGAACGTGGATTTACAATGGCAAATT
TGGATGTTGTTGTTATCGATGCACATCAATATACTCAAGAGGCTTTAATACAAATTGCTGGACGTGTTGGACGAAAATTA
GAATGTCCTACTGGAAAAGTATTGTTTTTTCATGAAGGAGTAAGTATGAATATGATTCAAGCTAAAAAAGAGATTCAAAG
GATGAACAAATTAGCATTAAAAAGAGGTTGGATTGATGAATAA

Domains

Predicted by InterProScan.

Helicase conserved C-terminal domain (Helicase_C)

(215-318)

Type III restriction enzyme, res subunit (ResIII)

(25-173)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFA Bacillus subtilis subsp. subtilis str. 168

38.938

94.167

0.367