Detailed information    

insolico Bioinformatically predicted

Overview

Name   ceuB   Type   Machinery gene
Locus tag   P3U19_RS03680 Genome accession   NZ_CP120128
Coordinates   766056..767027 (+) Length   323 a.a.
NCBI ID   WP_323696105.1    Uniprot ID   -
Organism   Staphylococcus aureus strain Dog049     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 761056..772027
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  P3U19_RS03660 (P3U19_03660) nrdI 761793..762191 (+) 399 WP_000692521.1 class Ib ribonucleoside-diphosphate reductase assembly flavoprotein NrdI -
  P3U19_RS03665 (P3U19_03665) nrdE 762154..764259 (+) 2106 WP_000855505.1 class 1b ribonucleoside-diphosphate reductase subunit alpha -
  P3U19_RS03670 (P3U19_03670) nrdF 764377..765348 (+) 972 WP_000562498.1 class 1b ribonucleoside-diphosphate reductase subunit beta -
  P3U19_RS03675 (P3U19_03675) - 765862..766017 (+) 156 WP_000499195.1 hypothetical protein -
  P3U19_RS03680 (P3U19_03680) ceuB 766056..767027 (+) 972 WP_323696105.1 ABC transporter permease Machinery gene
  P3U19_RS03685 (P3U19_03685) - 767014..767970 (+) 957 WP_043044670.1 iron chelate uptake ABC transporter family permease subunit -
  P3U19_RS03690 (P3U19_03690) - 767967..768728 (+) 762 WP_000616840.1 ABC transporter ATP-binding protein -
  P3U19_RS03695 (P3U19_03695) - 768847..769875 (+) 1029 WP_000754443.1 ferrated catecholamine ABC transporter substrate-binding lipoprotein SstD -
  P3U19_RS03700 (P3U19_03700) - 770192..770506 (-) 315 WP_001127269.1 CHY zinc finger protein -
  P3U19_RS03705 (P3U19_03705) murB 770524..771447 (-) 924 WP_000608435.1 UDP-N-acetylmuramate dehydrogenase -

Sequence

Protein


Download         Length: 323 a.a.        Molecular weight: 35637.21 Da        Isoelectric Point: 10.2162

>NTDB_id=730892 P3U19_RS03680 WP_323696105.1 766056..767027(+) (ceuB) [Staphylococcus aureus strain Dog049]
MKYLLKGNILLLLLILLTIISLFIGVSELSIKDLLHLTESQRNILFSSRIPRTMSILIAGSSLALAGLIMQQMMQNKFVS
PTTAGTMEWAKLGILIALLFFPTGHILLKLVFAVICSICGTFLFVKIIDFIKVKDVIFVPLLGIMMGGIVASFTTFISLR
TNAVQSIGNWLNGNFAIITSGRYEILYLSIPLLALTYLFANHFTIVGMGKDFTNNLGLSYEKLINIALFITATITALVVV
TVGRLPFLGLVIPNIISIYRGDHLKNAIPHTMMLGAIFVLFSDIVGRIVVYPYEINIGLTIGVFGTIIFLILLMKGRKNY
AQQ

Nucleotide


Download         Length: 972 bp        

>NTDB_id=730892 P3U19_RS03680 WP_323696105.1 766056..767027(+) (ceuB) [Staphylococcus aureus strain Dog049]
ATGAAGTATTTATTAAAGGGAAATATTTTGCTTCTATTACTAATATTGTTGACAATTATTTCGTTGTTCATAGGTGTGAG
TGAACTATCAATTAAAGATTTACTACATTTAACTGAGTCACAGCGGAATATTTTATTCTCAAGCCGAATACCAAGGACGA
TGAGTATTTTAATTGCTGGAAGTTCGTTGGCTTTAGCAGGCTTGATAATGCAACAAATGATGCAAAATAAGTTTGTTAGT
CCGACTACAGCTGGAACGATGGAATGGGCTAAACTAGGTATTTTAATTGCTTTATTGTTCTTTCCAACCGGTCATATTTT
ATTAAAACTAGTATTTGCTGTTATTTGCAGTATTTGCGGTACGTTTTTATTTGTTAAAATCATTGATTTTATAAAAGTGA
AAGATGTCATTTTTGTACCGCTTTTAGGAATTATGATGGGTGGGATTGTTGCAAGTTTCACAACCTTCATCTCATTGCGC
ACGAATGCTGTTCAAAGCATTGGTAACTGGCTTAACGGGAACTTTGCCATTATCACAAGTGGACGCTATGAAATTTTATA
TTTAAGTATTCCTCTTTTAGCATTGACATATCTTTTTGCTAATCATTTCACGATTGTAGGAATGGGTAAAGACTTTACTA
ATAATTTAGGTTTGAGTTACGAAAAATTAATTAACATCGCATTGTTTATTACTGCAACTATTACAGCATTGGTAGTGGTG
ACTGTTGGAAGATTACCGTTCTTAGGACTAGTAATACCAAATATTATTTCAATTTATCGAGGTGATCATTTGAAAAATGC
TATCCCTCATACGATGATGTTAGGTGCCATCTTTGTATTATTTTCTGATATAGTTGGCAGAATTGTTGTTTATCCATATG
AAATAAATATTGGTTTAACAATAGGTGTATTTGGAACAATCATTTTCCTTATCTTGCTTATGAAAGGTAGGAAAAATTAT
GCGCAACAATAA

Domains

Predicted by InterProScan.

FecCD transport family (FecCD)

(13-315)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ceuB Campylobacter jejuni subsp. jejuni 81-176

47.5

99.071

0.471