Detailed information    

insolico Bioinformatically predicted

Overview

Name   exbB   Type   Machinery gene
Locus tag   N5878_RS31110 Genome accession   NZ_CP104590
Coordinates   6684636..6685271 (+) Length   211 a.a.
NCBI ID   WP_003091163.1    Uniprot ID   A0A0H2ZBU7
Organism   Pseudomonas aeruginosa strain WTJH36     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 6679636..6690271
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  N5878_RS31095 (N5878_31095) - 6680342..6681586 (+) 1245 WP_003113987.1 lipoprotein-releasing ABC transporter permease subunit -
  N5878_RS31100 (N5878_31100) - 6681674..6682207 (-) 534 WP_003091165.1 DUF2062 domain-containing protein -
  N5878_RS31105 (N5878_31105) comA 6682338..6684563 (+) 2226 WP_016852665.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  N5878_RS31110 (N5878_31110) exbB 6684636..6685271 (+) 636 WP_003091163.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  N5878_RS31115 (N5878_31115) - 6685268..6685708 (+) 441 WP_003091161.1 ExbD/TolR family protein -
  N5878_RS31120 (N5878_31120) lpxK 6685708..6686706 (+) 999 WP_003091159.1 tetraacyldisaccharide 4'-kinase -
  N5878_RS31125 (N5878_31125) - 6686744..6686929 (+) 186 WP_003091157.1 Trm112 family protein -
  N5878_RS31130 (N5878_31130) kdsB 6686929..6687693 (+) 765 WP_016852666.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  N5878_RS31135 (N5878_31135) - 6687693..6688157 (+) 465 WP_003106924.1 low molecular weight protein-tyrosine-phosphatase -
  N5878_RS31140 (N5878_31140) murB 6688154..6689173 (+) 1020 WP_019416379.1 UDP-N-acetylmuramate dehydrogenase -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 22890.06 Da        Isoelectric Point: 6.7278

>NTDB_id=730885 N5878_RS31110 WP_003091163.1 6684636..6685271(+) (exbB) [Pseudomonas aeruginosa strain WTJH36]
MWELVQAGGWMMLPIILSSIAATAIVAERLWTLRKSRVAPPELLGQVWKQIKGKQLSAQKLKDLRANSPLGEILAAGLAN
SKHGREIMKECIEEAASGVIHELERYLNALGTIAAMAPLLGLLGTVFGMIQIFGAFMDNGMANSPMLAAGISKALITTAA
GLLVAIPAVFFHRYLLRRVDELVIAMEQEAIKLVEVVQGDREVDYVEEGKA

Nucleotide


Download         Length: 636 bp        

>NTDB_id=730885 N5878_RS31110 WP_003091163.1 6684636..6685271(+) (exbB) [Pseudomonas aeruginosa strain WTJH36]
GTGTGGGAACTGGTTCAAGCCGGCGGCTGGATGATGCTGCCGATCATTCTGAGTTCGATCGCCGCCACCGCCATCGTCGC
GGAGCGCCTGTGGACGCTGCGCAAGAGCCGCGTCGCGCCGCCCGAGCTGCTCGGCCAGGTGTGGAAGCAGATCAAGGGAA
AGCAACTGAGCGCCCAGAAGCTCAAGGACCTGCGCGCCAACTCGCCGCTGGGAGAGATCCTCGCCGCCGGTCTGGCCAAC
TCCAAGCACGGTCGCGAGATCATGAAGGAGTGCATCGAGGAGGCTGCTTCCGGTGTCATCCACGAGCTGGAGCGCTACCT
CAACGCCCTCGGTACCATCGCCGCGATGGCGCCGCTGCTGGGCCTGCTGGGTACGGTGTTCGGCATGATCCAGATCTTCG
GCGCCTTCATGGACAACGGCATGGCCAACTCGCCGATGCTCGCCGCGGGCATCTCCAAGGCATTGATCACCACCGCCGCC
GGCCTGCTGGTGGCGATTCCGGCGGTGTTCTTCCATCGCTACCTGCTGCGGCGGGTCGACGAACTGGTGATCGCCATGGA
GCAGGAGGCCATCAAGCTGGTGGAAGTGGTGCAGGGCGATCGTGAAGTCGACTACGTCGAGGAAGGCAAAGCGTGA

Domains

Predicted by InterproScan.

MotA/TolQ/ExbB proton channel family (MotA_ExbB)

(66-188)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0H2ZBU7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  exbB Pseudomonas stutzeri DSM 10701

81.043

100

0.81