Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilV   Type   Machinery gene
Locus tag   N5877_RS20100 Genome accession   NZ_CP104586
Coordinates   4358997..4359554 (-) Length   185 a.a.
NCBI ID   WP_003119423.1    Uniprot ID   -
Organism   Pseudomonas aeruginosa strain WTJH6     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 4353997..4364554
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  N5877_RS20085 (N5877_20085) pilY1 4354089..4357580 (-) 3492 WP_010793785.1 type 4a pilus biogenesis protein PilY1 -
  N5877_RS20090 (N5877_20090) pilX 4357592..4358179 (-) 588 WP_015648054.1 type 4a pilus minor pilin PilX -
  N5877_RS20095 (N5877_20095) pilW 4358176..4359000 (-) 825 WP_003119422.1 type 4a pilus minor pilin PilW -
  N5877_RS20100 (N5877_20100) pilV 4358997..4359554 (-) 558 WP_003119423.1 type 4a pilus minor pilin PilV Machinery gene
  N5877_RS20105 (N5877_20105) - 4359545..4360051 (-) 507 WP_003102598.1 Tfp pilus assembly protein FimT/FimU -
  N5877_RS20110 (N5877_20110) - 4360157..4360666 (-) 510 WP_003102595.1 Tfp pilus assembly protein FimT/FimU -
  N5877_RS20115 (N5877_20115) thiO 4360801..4361895 (+) 1095 WP_003119424.1 glycine oxidase ThiO -
  N5877_RS20120 (N5877_20120) pilR 4361941..4363278 (-) 1338 WP_003094694.1 two-component system response regulator PilR Regulator

Sequence

Protein


Download         Length: 185 a.a.        Molecular weight: 20061.15 Da        Isoelectric Point: 8.2255

>NTDB_id=730809 N5877_RS20100 WP_003119423.1 4358997..4359554(-) (pilV) [Pseudomonas aeruginosa strain WTJH6]
MLLKSRHRSLHQSGFSMIEVLVALLLISIGVLGMIAMQGKTIQYTADSVERNKAAMLGSNLLESMRASPKALYDVKDQMA
TQSDFFKAKGSAFPTAPSSCTPLPDAIKDRLGCWAEQVKNELPGAGDLLKSDYYICRSSKPGDCDGKGSMLEIRLAWRGK
QGACVNAADSSADTSLCYYTLRVEP

Nucleotide


Download         Length: 558 bp        

>NTDB_id=730809 N5877_RS20100 WP_003119423.1 4358997..4359554(-) (pilV) [Pseudomonas aeruginosa strain WTJH6]
ATGCTATTGAAATCGCGACACAGGTCGCTGCACCAATCCGGCTTCAGCATGATCGAAGTGCTGGTCGCCCTGCTGCTGAT
CAGCATCGGCGTGCTGGGCATGATCGCCATGCAGGGCAAGACCATCCAGTACACCGCCGACTCGGTCGAGCGCAACAAGG
CAGCCATGCTCGGCAGCAACCTGCTGGAAAGCATGCGGGCGAGCCCGAAGGCGCTGTACGACGTCAAGGACCAGATGGCC
ACGCAATCCGACTTCTTCAAGGCCAAGGGGTCGGCGTTCCCCACCGCGCCGTCCTCCTGCACGCCATTGCCCGACGCGAT
CAAGGACCGCCTGGGATGCTGGGCGGAACAGGTGAAGAACGAACTGCCAGGCGCTGGCGACCTGCTGAAGAGCGACTACT
ACATCTGCCGCAGCTCGAAGCCGGGCGACTGCGACGGCAAGGGCTCCATGCTGGAAATCCGCCTTGCCTGGCGCGGCAAG
CAAGGCGCCTGCGTCAACGCCGCCGACAGCAGCGCCGACACCTCCCTCTGCTACTACACCCTCAGGGTCGAGCCATGA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(11-34)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilV Pseudomonas aeruginosa PAK

99.459

100

0.995