Detailed information    

insolico Bioinformatically predicted

Overview

Name   exbB   Type   Machinery gene
Locus tag   N5O88_RS07515 Genome accession   NZ_CP104583
Coordinates   1568885..1569517 (+) Length   210 a.a.
NCBI ID   WP_039964821.1    Uniprot ID   W6RDS6
Organism   Pseudomonas sp. GD03721     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1563885..1574517
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  N5O88_RS07495 (N5O88_07495) lolD 1563984..1564670 (+) 687 WP_198134354.1 lipoprotein-releasing ABC transporter ATP-binding protein LolD -
  N5O88_RS07500 (N5O88_07500) - 1564670..1565914 (+) 1245 WP_279532606.1 lipoprotein-releasing ABC transporter permease subunit -
  N5O88_RS07505 (N5O88_07505) - 1565949..1566476 (-) 528 WP_147812237.1 DUF2062 domain-containing protein -
  N5O88_RS07510 (N5O88_07510) comA 1566603..1568828 (+) 2226 WP_279532607.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  N5O88_RS07515 (N5O88_07515) exbB 1568885..1569517 (+) 633 WP_039964821.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  N5O88_RS07520 (N5O88_07520) - 1569514..1569942 (+) 429 WP_206409178.1 ExbD/TolR family protein -
  N5O88_RS07525 (N5O88_07525) lpxK 1569943..1570944 (+) 1002 WP_279532608.1 tetraacyldisaccharide 4'-kinase -
  N5O88_RS07530 (N5O88_07530) - 1570967..1571152 (+) 186 WP_003245207.1 Trm112 family protein -
  N5O88_RS07535 (N5O88_07535) kdsB 1571153..1571917 (+) 765 WP_279532609.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  N5O88_RS07540 (N5O88_07540) - 1571917..1572381 (+) 465 WP_279532610.1 low molecular weight protein-tyrosine-phosphatase -
  N5O88_RS07545 (N5O88_07545) murB 1572378..1573397 (+) 1020 WP_279532611.1 UDP-N-acetylmuramate dehydrogenase -

Sequence

Protein


Download         Length: 210 a.a.        Molecular weight: 22895.17 Da        Isoelectric Point: 8.5156

>NTDB_id=730737 N5O88_RS07515 WP_039964821.1 1568885..1569517(+) (exbB) [Pseudomonas sp. GD03721]
MWELVKAGGWMMLPIILCSIAAAGIVAERLWTLRPARVTPANLLAQVWRWIKDKKLNNQKLKELREHSPLGQILAAGLAN
SKHGREIMKECIEEAAARVIHELERYLNALGTIAGIAPLLGLLGTVLGMIEIFSSFMGSGMANASMLASGIAKALITTAA
GLMVAIPALFFHRYLQRRVDELVVGMEQEAIKLVEMVQGDRDVDLGEGKA

Nucleotide


Download         Length: 633 bp        

>NTDB_id=730737 N5O88_RS07515 WP_039964821.1 1568885..1569517(+) (exbB) [Pseudomonas sp. GD03721]
GTGTGGGAACTGGTCAAAGCTGGCGGCTGGATGATGCTGCCGATCATTCTCTGTTCCATCGCTGCTGCCGGTATCGTCGC
TGAGCGCCTGTGGACCCTGCGGCCCGCCCGCGTCACCCCGGCCAATCTGCTGGCCCAGGTGTGGCGCTGGATCAAGGACA
AGAAACTCAACAACCAGAAGCTCAAGGAGCTGCGCGAGCATTCGCCGCTGGGGCAGATACTCGCTGCCGGCCTGGCCAAC
TCCAAGCATGGTCGCGAAATCATGAAGGAGTGCATCGAGGAGGCTGCCGCGCGCGTCATCCACGAGCTGGAGCGTTATCT
CAATGCGCTCGGCACCATTGCCGGCATCGCGCCGCTGCTGGGCCTGCTTGGCACCGTGCTGGGCATGATTGAAATCTTCA
GCTCCTTCATGGGCTCGGGCATGGCTAACGCTTCCATGCTCGCCAGCGGTATCGCCAAGGCGCTGATCACCACGGCAGCC
GGCCTGATGGTGGCGATCCCAGCGCTGTTTTTCCACCGCTACCTGCAGCGCCGCGTCGACGAGTTGGTGGTGGGCATGGA
GCAGGAAGCGATCAAGTTGGTGGAGATGGTGCAGGGTGATCGCGATGTCGACCTGGGCGAGGGCAAGGCGTGA

Domains

Predicted by InterproScan.

MotA/TolQ/ExbB proton channel family (MotA_ExbB)

(67-187)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB W6RDS6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  exbB Pseudomonas stutzeri DSM 10701

87.619

100

0.876