Detailed information    

insolico Bioinformatically predicted

Overview

Name   cytR   Type   Regulator
Locus tag   GZK95_RS00985 Genome accession   NZ_AP019654
Coordinates   212649..213674 (+) Length   341 a.a.
NCBI ID   WP_263862215.1    Uniprot ID   -
Organism   Vibrio panuliri strain JCM 19500     
Function   promote competence gene expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 207649..218674
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GZK95_RS00970 - 208056..209330 (-) 1275 WP_075714633.1 malic enzyme-like NAD(P)-binding protein -
  GZK95_RS00975 rpmE 209550..209771 (-) 222 WP_075711169.1 50S ribosomal protein L31 -
  GZK95_RS00980 priA 210180..212381 (+) 2202 WP_075714635.1 primosomal protein N' -
  GZK95_RS00985 cytR 212649..213674 (+) 1026 WP_263862215.1 DNA-binding transcriptional regulator CytR Regulator
  GZK95_RS00990 - 213870..214406 (+) 537 WP_075711175.1 SPOR domain-containing protein -
  GZK95_RS00995 galE 214479..215495 (-) 1017 WP_075714637.1 UDP-glucose 4-epimerase GalE -
  GZK95_RS01000 hslV 215664..216221 (+) 558 WP_075711179.1 ATP-dependent protease subunit HslV -
  GZK95_RS01005 hslU 216247..217581 (+) 1335 WP_075711181.1 HslU--HslV peptidase ATPase subunit -

Sequence

Protein


Download         Length: 341 a.a.        Molecular weight: 37745.55 Da        Isoelectric Point: 7.3478

>NTDB_id=73073 GZK95_RS00985 WP_263862215.1 212649..213674(+) (cytR) [Vibrio panuliri strain JCM 19500]
MKRVTFMATMKDVAQLAGVSTATVSRALMNPEKVSSATRKRVEDAVLEAGYSPNSLARNLRRNESKTIIAIVPDICDPYY
TEIIRGIEDAAMEHGYIVLLGDSAQQKKRENSFVNLVFTKQADGMLLLGTDLPFDVSKPEQKNLPPMVMACEFAPELELP
TVHIDNLTSAFEVVNYLTQLGHKRIAQISGPQDAALCQFRQQGYLQALRRAGISMNPSYSIHGNFSFEDGAKAVRQLLTL
PEPPTAIFCHNDAMAIGAIQEAKRLGLRVPQDLSVVGFDDIQFAQYCDPPLTTISQPRYEIGRQAMLMMLEILRGHDVRT
GSRLLETNLVVRKSAAPPRVV

Nucleotide


Download         Length: 1026 bp        

>NTDB_id=73073 GZK95_RS00985 WP_263862215.1 212649..213674(+) (cytR) [Vibrio panuliri strain JCM 19500]
ATTAAGAGGGTTACATTTATGGCGACAATGAAGGATGTTGCCCAGCTCGCAGGGGTTTCAACAGCGACGGTTTCGAGAGC
GCTGATGAATCCCGAAAAAGTCTCATCGGCAACGCGTAAACGCGTCGAAGATGCAGTACTGGAAGCTGGATACTCACCAA
ACTCACTTGCGCGAAACTTACGCCGCAATGAGTCCAAAACCATCATCGCGATCGTTCCTGATATCTGCGATCCATACTAT
ACCGAGATTATTCGCGGGATAGAGGATGCCGCAATGGAGCATGGCTATATTGTGTTACTCGGTGATAGTGCTCAGCAGAA
AAAACGCGAGAACTCTTTTGTGAATCTGGTTTTTACTAAGCAAGCTGACGGTATGTTGCTGCTTGGAACGGATTTGCCCT
TTGATGTTAGCAAGCCCGAGCAAAAGAACCTTCCACCTATGGTGATGGCGTGTGAGTTCGCTCCTGAACTCGAGCTACCA
ACCGTTCATATTGATAACCTGACTTCTGCGTTTGAAGTGGTCAACTACTTGACTCAACTCGGTCATAAACGCATCGCCCA
GATTTCTGGCCCGCAAGATGCGGCATTGTGCCAGTTCCGTCAGCAGGGGTACTTGCAAGCACTACGTCGTGCTGGGATCA
GCATGAATCCGTCGTACAGTATTCATGGTAATTTTAGTTTTGAAGATGGCGCCAAAGCAGTACGTCAGTTGTTAACCCTG
CCTGAACCACCCACTGCAATTTTCTGTCACAACGATGCAATGGCTATTGGAGCAATTCAAGAAGCGAAGCGTTTAGGCCT
GCGTGTACCGCAAGACTTATCCGTCGTTGGCTTTGATGATATTCAGTTTGCTCAATACTGCGATCCACCGTTGACGACGA
TTTCTCAGCCTCGTTATGAGATTGGTCGTCAAGCGATGTTAATGATGTTGGAGATCTTACGTGGCCATGATGTTCGTACT
GGTTCACGACTTCTAGAGACCAATTTGGTGGTACGCAAGAGTGCCGCGCCACCAAGAGTTGTCTAG

Domains

Predicted by InterproScan.

Periplasmic binding protein-like domain (Peripla_BP_3)

(174-334)

Bacterial regulatory proteins, lacI family (LacI)

(9-54)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cytR Vibrio cholerae C6706

91.867

97.361

0.894
  cytR Vibrio parahaemolyticus RIMD 2210633

88.496

99.413

0.88

Multiple sequence alignment