Detailed information
Bioinformatically predicted
Overview
| Name | chiS | Type | Regulator |
| Locus tag | GZI12_RS21185 | Genome accession | NZ_AP019651 |
| Coordinates | 2476114..2476842 (+) | Length | 242 a.a. |
| NCBI ID | WP_408647269.1 | Uniprot ID | - |
| Organism | Vibrio taketomensis strain C4III291 | ||
| Function | chitin sensor (predicted from homology) Competence regulation |
||
Genomic Context
Location: 2471114..2481842
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| GZI12_RS11635 | rsmC | 2472123..2473145 (+) | 1023 | WP_162047133.1 | 16S rRNA (guanine(1207)-N(2))-methyltransferase RsmC | - |
| GZI12_RS21175 | - | 2473460..2475508 (+) | 2049 | Protein_2238 | sensor histidine kinase | - |
| GZI12_RS21180 | - | 2475688..2475900 (+) | 213 | Protein_2239 | response regulator | - |
| GZI12_RS21185 | chiS | 2476114..2476842 (+) | 729 | WP_408647269.1 | hypothetical protein | Regulator |
| GZI12_RS11645 | - | 2477496..2479178 (+) | 1683 | WP_162047134.1 | ABC transporter substrate-binding protein | - |
| GZI12_RS11650 | - | 2479354..2480340 (+) | 987 | WP_162047135.1 | ABC transporter permease | - |
| GZI12_RS11655 | - | 2480343..2481368 (+) | 1026 | WP_162047136.1 | ABC transporter permease | - |
Sequence
Protein
Download Length: 242 a.a. Molecular weight: 28050.76 Da Isoelectric Point: 6.7229
>NTDB_id=73068 GZI12_RS21185 WP_408647269.1 2476114..2476842(+) (chiS) [Vibrio taketomensis strain C4III291]
MCTRNDNRIRFANEAAARLFKRSVEQLKRSSSEEILAPRFLDISQEHYCGKVDIYVEDMRQHIDADILRLPEASGLKSMY
IFDNGGGVNAQRINNLETAIEALSSYAFDGDKGKLQQLKELGGEFTRLADRVSSDQKSKQDLMREVLVDAMTTALDYWEN
SSGHSKFTFAEQSGLWRVYLDRSTLQTRTLDKYLRIETLPKTPRWRTVLNSLEYILDNCKDMTKERTKIEELRDKLQYLL
TT
MCTRNDNRIRFANEAAARLFKRSVEQLKRSSSEEILAPRFLDISQEHYCGKVDIYVEDMRQHIDADILRLPEASGLKSMY
IFDNGGGVNAQRINNLETAIEALSSYAFDGDKGKLQQLKELGGEFTRLADRVSSDQKSKQDLMREVLVDAMTTALDYWEN
SSGHSKFTFAEQSGLWRVYLDRSTLQTRTLDKYLRIETLPKTPRWRTVLNSLEYILDNCKDMTKERTKIEELRDKLQYLL
TT
Nucleotide
Download Length: 729 bp
>NTDB_id=73068 GZI12_RS21185 WP_408647269.1 2476114..2476842(+) (chiS) [Vibrio taketomensis strain C4III291]
GTGTGTACACGTAATGACAATCGAATTCGCTTCGCGAATGAGGCTGCAGCACGACTATTTAAGCGCTCCGTAGAACAACT
CAAGCGTTCAAGCTCAGAAGAGATTCTTGCGCCTCGATTCCTCGATATCAGCCAAGAACACTACTGCGGGAAGGTTGATA
TTTATGTGGAAGATATGCGTCAACATATCGATGCAGACATTTTGCGCCTACCTGAGGCTTCTGGCCTAAAATCAATGTAT
ATCTTTGATAACGGTGGTGGTGTAAACGCTCAACGCATCAATAACTTAGAAACTGCAATTGAAGCGCTAAGCAGCTACGC
TTTTGATGGTGATAAAGGCAAGCTACAGCAACTGAAAGAGCTCGGCGGCGAATTTACACGCTTGGCGGATCGCGTTAGCA
GTGACCAAAAATCTAAGCAAGATTTGATGCGTGAAGTGCTAGTGGACGCAATGACCACGGCTCTGGATTATTGGGAAAAC
TCATCAGGTCACAGCAAATTTACTTTTGCTGAGCAAAGTGGTCTATGGCGAGTTTATTTGGACCGTAGTACGCTACAAAC
TCGAACTCTGGATAAATATTTGCGTATCGAAACTCTACCGAAAACACCACGCTGGCGCACGGTATTGAATTCACTAGAGT
ACATTCTAGATAACTGCAAAGATATGACCAAAGAGCGAACTAAGATTGAAGAGTTGCGGGATAAACTGCAGTATTTGCTC
ACCACTTAG
GTGTGTACACGTAATGACAATCGAATTCGCTTCGCGAATGAGGCTGCAGCACGACTATTTAAGCGCTCCGTAGAACAACT
CAAGCGTTCAAGCTCAGAAGAGATTCTTGCGCCTCGATTCCTCGATATCAGCCAAGAACACTACTGCGGGAAGGTTGATA
TTTATGTGGAAGATATGCGTCAACATATCGATGCAGACATTTTGCGCCTACCTGAGGCTTCTGGCCTAAAATCAATGTAT
ATCTTTGATAACGGTGGTGGTGTAAACGCTCAACGCATCAATAACTTAGAAACTGCAATTGAAGCGCTAAGCAGCTACGC
TTTTGATGGTGATAAAGGCAAGCTACAGCAACTGAAAGAGCTCGGCGGCGAATTTACACGCTTGGCGGATCGCGTTAGCA
GTGACCAAAAATCTAAGCAAGATTTGATGCGTGAAGTGCTAGTGGACGCAATGACCACGGCTCTGGATTATTGGGAAAAC
TCATCAGGTCACAGCAAATTTACTTTTGCTGAGCAAAGTGGTCTATGGCGAGTTTATTTGGACCGTAGTACGCTACAAAC
TCGAACTCTGGATAAATATTTGCGTATCGAAACTCTACCGAAAACACCACGCTGGCGCACGGTATTGAATTCACTAGAGT
ACATTCTAGATAACTGCAAAGATATGACCAAAGAGCGAACTAAGATTGAAGAGTTGCGGGATAAACTGCAGTATTTGCTC
ACCACTTAG
Domains
No domain identified.
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| chiS | Vibrio cholerae strain A1552 |
73.967 |
100 |
0.74 |