Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   N5O86_RS01685 Genome accession   NZ_CP104581
Coordinates   378903..380288 (+) Length   461 a.a.
NCBI ID   WP_279493954.1    Uniprot ID   -
Organism   Delftia tsuruhatensis strain GD03927     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 373903..385288
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  N5O86_RS01660 (N5O86_01660) lplT 374723..376024 (-) 1302 WP_016448591.1 lysophospholipid transporter LplT -
  N5O86_RS01665 (N5O86_01665) alr 376159..377262 (+) 1104 WP_209803097.1 alanine racemase -
  N5O86_RS01670 (N5O86_01670) - 377263..377703 (-) 441 WP_016448589.1 MarR family transcriptional regulator -
  N5O86_RS01675 (N5O86_01675) - 377800..378615 (+) 816 WP_017407487.1 siderophore-interacting protein -
  N5O86_RS01685 (N5O86_01685) radA 378903..380288 (+) 1386 WP_279493954.1 DNA repair protein RadA Machinery gene
  N5O86_RS01690 (N5O86_01690) - 380372..380818 (+) 447 WP_016448586.1 hypothetical protein -
  N5O86_RS01695 (N5O86_01695) - 380863..381801 (+) 939 WP_016448585.1 branched-chain amino acid transaminase -
  N5O86_RS01700 (N5O86_01700) - 381923..382132 (+) 210 WP_012202256.1 zinc-finger domain-containing protein -
  N5O86_RS01705 (N5O86_01705) - 382164..383024 (-) 861 WP_061288639.1 capsular polysaccharide synthesis protein -
  N5O86_RS01710 (N5O86_01710) - 383155..384423 (+) 1269 WP_047468084.1 O-antigen ligase family protein -

Sequence

Protein


Download         Length: 461 a.a.        Molecular weight: 48099.71 Da        Isoelectric Point: 7.6673

>NTDB_id=730676 N5O86_RS01685 WP_279493954.1 378903..380288(+) (radA) [Delftia tsuruhatensis strain GD03927]
MAKDKTMFICSACGGSSPRWLGKCPACGAWNSLIEAVAEPAGAGKNRLSQPQGYAGLANAQAVMPLSAIEAQDVARTPSG
IEELDRVLGGGIVEGGVVLIGGDPGIGKSTLLLQAMDALHRVGLPTLYVTGEESGAQVALRSRRLGLEASQVNVLAEIQL
EKILATMEATQPAVVVIDSIQTVYSDQLSSAPGSVAQVRECAAHLTRAAKTTGITVILVGHVTKEGALAGPRVLEHMVDT
VLYFEGDTHSNFRLVRAIKNRFGAVNEIGVFAMTEKGLKGVTNPSAIFLSQHSEPVPGSCVLVTLEGTRPMLVEIQALVD
QGGPAPRRLSVGLDRDRLAMLLAVLSRHAGVACADQDVFVNAVGGVRISEPAADLAVMLSITSSLRGRALPKGFLAFGEV
GLAGEVRPAPRGQERLKEAAKLGFTMAVVPKANAPKKAIPGLTVHAVERVDEAMNIVRGMG

Nucleotide


Download         Length: 1386 bp        

>NTDB_id=730676 N5O86_RS01685 WP_279493954.1 378903..380288(+) (radA) [Delftia tsuruhatensis strain GD03927]
ATGGCCAAAGACAAAACCATGTTCATCTGCAGTGCCTGCGGCGGCTCCAGCCCGCGCTGGCTGGGCAAGTGCCCGGCCTG
CGGGGCCTGGAATTCGCTGATTGAGGCCGTTGCCGAGCCTGCGGGCGCGGGCAAGAACCGGCTCAGCCAGCCGCAGGGCT
ATGCGGGCCTGGCCAACGCCCAGGCCGTGATGCCGCTGTCGGCCATCGAGGCCCAGGACGTGGCGCGCACGCCCAGCGGC
ATCGAGGAGCTGGACCGCGTGCTGGGCGGCGGCATTGTCGAAGGCGGCGTGGTGCTGATTGGTGGCGACCCCGGCATCGG
CAAGTCCACCCTGCTGCTGCAGGCCATGGATGCGCTGCACCGCGTGGGCTTGCCCACGCTGTATGTCACGGGCGAGGAAA
GCGGTGCCCAGGTCGCGCTGCGCTCGCGCCGCCTGGGGCTGGAGGCCAGCCAGGTCAATGTGCTGGCCGAGATCCAGCTG
GAGAAGATCCTCGCCACCATGGAGGCCACGCAGCCGGCCGTGGTCGTCATCGACTCCATTCAGACCGTGTACTCGGACCA
GCTGTCCTCGGCGCCGGGCTCGGTGGCCCAGGTGCGCGAATGCGCGGCCCACCTCACGCGCGCGGCCAAGACCACGGGCA
TCACCGTGATCCTGGTCGGCCATGTGACCAAGGAAGGCGCCCTGGCCGGCCCGCGCGTGCTGGAGCACATGGTGGACACC
GTGCTCTACTTCGAGGGCGACACGCACAGCAACTTCCGCCTGGTGCGCGCCATCAAGAACCGCTTTGGTGCCGTCAACGA
GATCGGCGTCTTCGCCATGACGGAGAAGGGCCTCAAGGGCGTCACCAACCCCAGCGCCATCTTCCTGTCCCAGCACAGCG
AGCCGGTGCCGGGCTCCTGCGTGCTGGTCACGCTGGAGGGCACGCGGCCCATGCTGGTGGAAATACAGGCCCTGGTCGAC
CAGGGCGGCCCCGCGCCCCGGCGCCTGTCCGTGGGCCTGGACCGGGACCGGCTGGCCATGCTGCTGGCCGTGCTCAGCCG
CCATGCGGGCGTGGCCTGCGCGGACCAGGATGTCTTCGTCAACGCCGTGGGCGGCGTACGCATCAGCGAGCCTGCGGCCG
ACCTGGCCGTCATGCTGTCCATCACCTCCAGCCTGCGCGGCCGCGCCCTGCCCAAGGGATTCCTGGCCTTTGGCGAAGTG
GGCCTGGCCGGCGAAGTGCGCCCCGCGCCGCGCGGCCAGGAGCGCCTGAAGGAAGCCGCCAAGCTCGGCTTCACCATGGC
CGTGGTGCCCAAGGCCAATGCGCCCAAGAAGGCCATCCCCGGCCTGACCGTGCATGCCGTGGAGCGCGTGGACGAAGCCA
TGAACATCGTCCGAGGGATGGGCTGA

Domains

Predicted by InterproScan.

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)

AAA domain (AAA_25)

(68-226)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

48.684

98.915

0.482
  radA Streptococcus mitis NCTC 12261

47.149

98.915

0.466
  radA Streptococcus pneumoniae D39

47.964

95.879

0.46
  radA Streptococcus pneumoniae TIGR4

47.964

95.879

0.46
  radA Streptococcus pneumoniae R6

47.964

95.879

0.46
  radA Streptococcus pneumoniae Rx1

47.964

95.879

0.46
  radA Streptococcus mitis SK321

48.73

93.926

0.458