Detailed information    

insolico Bioinformatically predicted

Overview

Name   cytR   Type   Regulator
Locus tag   GZI12_RS13220 Genome accession   NZ_AP019651
Coordinates   2791325..2792332 (-) Length   335 a.a.
NCBI ID   WP_162047363.1    Uniprot ID   -
Organism   Vibrio taketomensis strain C4III291     
Function   promote competence gene expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 2786325..2797332
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GZI12_RS13200 hslU 2787304..2788638 (-) 1335 WP_162047359.1 HslU--HslV peptidase ATPase subunit -
  GZI12_RS13205 hslV 2788679..2789221 (-) 543 WP_162047360.1 ATP-dependent protease subunit HslV -
  GZI12_RS13210 galE 2789488..2790504 (+) 1017 WP_162047361.1 UDP-glucose 4-epimerase GalE -
  GZI12_RS13215 - 2790571..2791107 (-) 537 WP_162047362.1 SPOR domain-containing protein -
  GZI12_RS13220 cytR 2791325..2792332 (-) 1008 WP_162047363.1 DNA-binding transcriptional regulator CytR Regulator
  GZI12_RS13225 priA 2792610..2794811 (-) 2202 WP_162047364.1 primosomal protein N' -
  GZI12_RS13230 rpmE 2795092..2795313 (+) 222 WP_162047365.1 50S ribosomal protein L31 -
  GZI12_RS13235 - 2795540..2796814 (+) 1275 WP_162047366.1 malic enzyme-like NAD(P)-binding protein -
  GZI12_RS13240 metJ 2796931..2797248 (-) 318 WP_162047367.1 met regulon transcriptional regulator MetJ -

Sequence

Protein


Download         Length: 335 a.a.        Molecular weight: 36840.48 Da        Isoelectric Point: 6.6380

>NTDB_id=73062 GZI12_RS13220 WP_162047363.1 2791325..2792332(-) (cytR) [Vibrio taketomensis strain C4III291]
MATMKDVAQLAGVSTATVSRALMNPEKVSSATRKRVEDAVLEAGYSPNSLARNLRRNESKTIIAIVPDICDPYYTEIIRG
IEDAAMEHGYIVLLGDSAQQKKRENSFVNLVFTKQADGMLLLGTDLPFDVSKPEQKNLPPMVMACEFAPELELPTVHIDN
LTSAFEVVNYLTQLGHKRIAQISGPQAAALCQFRQQGYMQALRRAGITMNPAYSIFGNFSFEDGAKAVRQLLTLPEPPTA
IFCHNDAMAIGAIQEAKRLGLRVPQDLSVVGFDDIQFAQYCDPPLTTISQPRYEIGRQAMLMMLEILRGHDVSSGSRLLE
TSLVVRKSAAPPRAI

Nucleotide


Download         Length: 1008 bp        

>NTDB_id=73062 GZI12_RS13220 WP_162047363.1 2791325..2792332(-) (cytR) [Vibrio taketomensis strain C4III291]
ATGGCGACAATGAAGGATGTTGCCCAGCTAGCAGGGGTTTCAACAGCGACAGTATCAAGGGCGTTGATGAATCCTGAGAA
GGTTTCTTCGGCGACGCGCAAGCGTGTTGAAGATGCAGTTTTAGAAGCTGGTTACTCACCAAACTCACTGGCGCGCAACT
TGCGTCGTAATGAGTCGAAAACCATTATCGCAATCGTTCCAGATATCTGTGATCCGTACTATACCGAGATCATTCGTGGT
ATCGAAGATGCTGCAATGGAACACGGATACATTGTATTACTTGGTGACAGCGCACAACAAAAGAAGCGCGAGAACTCTTT
TGTTAATTTAGTTTTTACTAAGCAAGCCGATGGTATGTTGCTGTTGGGTACCGACTTACCTTTCGATGTGAGTAAGCCTG
AGCAAAAAAATTTACCGCCGATGGTCATGGCATGCGAATTTGCTCCAGAGCTTGAATTGCCAACGGTGCATATTGATAAC
TTAACTTCAGCATTTGAAGTGGTTAACTATTTAACTCAGCTTGGCCACAAGCGTATTGCGCAAATATCGGGCCCACAAGC
GGCCGCATTATGTCAGTTCCGTCAACAAGGTTACATGCAAGCTCTGCGTCGTGCAGGTATAACCATGAATCCGGCATACA
GTATTTTCGGTAATTTCTCTTTTGAAGATGGTGCCAAAGCTGTACGCCAATTGTTGACTTTACCAGAGCCGCCAACGGCT
ATTTTCTGTCACAACGATGCGATGGCAATTGGTGCGATTCAAGAGGCAAAACGTTTAGGTTTACGAGTGCCACAAGATCT
CTCTGTGGTGGGATTTGATGATATTCAGTTTGCACAGTATTGCGATCCACCGTTAACCACTATTTCCCAGCCAAGATATG
AAATTGGCCGTCAAGCTATGCTAATGATGTTGGAGATATTGCGTGGCCATGATGTAAGCTCGGGCTCGAGATTATTAGAA
ACCAGCTTAGTCGTGCGTAAGAGTGCAGCTCCTCCACGAGCAATTTAA

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, lacI family (LacI)

(3-48)

Periplasmic binding protein-like domain (Peripla_BP_3)

(168-328)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cytR Vibrio cholerae C6706

92.169

99.104

0.913
  cytR Vibrio parahaemolyticus RIMD 2210633

89.79

99.403

0.893

Multiple sequence alignment