Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGB   Type   Machinery gene
Locus tag   N4T05_RS07685 Genome accession   NZ_CP104559
Coordinates   1597461..1598531 (-) Length   356 a.a.
NCBI ID   WP_261722542.1    Uniprot ID   -
Organism   Staphylococcus aureus strain SA2107     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1592461..1603531
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  N4T05_RS07645 (N4T05_07645) gcvPA 1592638..1593984 (-) 1347 WP_252301764.1 aminomethyl-transferring glycine dehydrogenase subunit GcvPA -
  N4T05_RS07650 (N4T05_07650) gcvT 1594004..1595095 (-) 1092 WP_000093344.1 glycine cleavage system aminomethyltransferase GcvT -
  N4T05_RS07655 (N4T05_07655) - 1595254..1595778 (-) 525 WP_001015120.1 shikimate kinase -
  N4T05_RS07660 (N4T05_07660) - 1595768..1595914 (-) 147 WP_234739881.1 hypothetical protein -
  N4T05_RS07665 (N4T05_07665) comGF 1596011..1596508 (-) 498 WP_001796472.1 competence type IV pilus minor pilin ComGF Machinery gene
  N4T05_RS07670 (N4T05_07670) comGE 1596426..1596725 (-) 300 WP_000844413.1 hypothetical protein Machinery gene
  N4T05_RS07675 (N4T05_07675) comGD 1596712..1597158 (-) 447 WP_001796473.1 competence type IV pilus minor pilin ComGD Machinery gene
  N4T05_RS07680 (N4T05_07680) comGC 1597136..1597447 (-) 312 WP_000472255.1 competence type IV pilus major pilin ComGC Machinery gene
  N4T05_RS07685 (N4T05_07685) comGB 1597461..1598531 (-) 1071 WP_261722542.1 competence type IV pilus assembly protein ComGB Machinery gene
  N4T05_RS07690 (N4T05_07690) comGA 1598503..1599477 (-) 975 WP_000697220.1 competence type IV pilus ATPase ComGA Machinery gene
  N4T05_RS07695 (N4T05_07695) - 1599529..1600152 (-) 624 WP_001223009.1 MBL fold metallo-hydrolase -
  N4T05_RS07700 (N4T05_07700) - 1600149..1600478 (-) 330 WP_001018871.1 MTH1187 family thiamine-binding protein -
  N4T05_RS07705 (N4T05_07705) - 1600478..1601464 (-) 987 WP_000161307.1 ROK family glucokinase -
  N4T05_RS07710 (N4T05_07710) - 1601461..1601664 (-) 204 WP_000087561.1 YqgQ family protein -
  N4T05_RS07715 (N4T05_07715) - 1601645..1603108 (-) 1464 WP_001017870.1 rhomboid family intramembrane serine protease -

Sequence

Protein


Download         Length: 356 a.a.        Molecular weight: 41594.04 Da        Isoelectric Point: 10.0604

>NTDB_id=730563 N4T05_RS07685 WP_261722542.1 1597461..1598531(-) (comGB) [Staphylococcus aureus strain SA2107]
MKLQWINTFKLHSKKRQLSKAQQIDLLSNLCNLLKYGFTLYQSFQFLNLQMTYKNKQLGITILSEISNGAPCNQILSLIG
YSDTIVMQVYLAERFGNIIDVLEETVNYMKVNRKSEQRLLKTLQYPLILVSIFIAMIIILNFTVIPQFQQLYTSMNIQLS
SFQKTLSFFITSLPTIIVVMLIIVSMLAIIMKLIYNKLNMLNKINFVMKLPLISGYFQLFKTYFVTNELVLFYKNGITLQ
SIVDVYINHSSDPFRQFLGKYLLTYSEMGYGLPQILEKLKCFKPQLIKFVLQGEKRGKLEVELKLYSQILVRQIEDKEIK
QTQFLQPILFLILGLFIVAIYLVIMLPMFQMMQSIK

Nucleotide


Download         Length: 1071 bp        

>NTDB_id=730563 N4T05_RS07685 WP_261722542.1 1597461..1598531(-) (comGB) [Staphylococcus aureus strain SA2107]
GTGAAACTACAATGGATAAATACATTTAAACTACATTCTAAGAAGCGACAATTAAGTAAGGCCCAACAAATCGATTTACT
TTCAAATTTATGTAATTTGTTGAAATATGGTTTCACTCTGTATCAAAGTTTTCAATTTTTAAATCTTCAAATGACATATA
AAAATAAGCAATTAGGCATCACCATTCTAAGTGAAATTTCAAATGGTGCACCATGCAACCAGATATTATCACTGATAGGT
TATAGCGATACTATCGTCATGCAAGTATATTTGGCAGAAAGATTTGGCAATATCATAGACGTTCTAGAAGAAACCGTAAA
TTATATGAAAGTGAATAGAAAGTCAGAACAACGATTGTTAAAGACACTGCAATACCCCTTAATACTAGTCTCTATTTTTA
TTGCTATGATTATAATATTAAACTTCACAGTAATTCCACAGTTTCAACAATTATATACTTCTATGAATATTCAACTATCT
TCTTTTCAAAAAACATTGTCTTTTTTCATTACTAGCTTACCTACTATAATTGTAGTAATGCTCATAATAGTATCTATGTT
GGCTATTATTATGAAATTAATTTATAACAAATTAAATATGCTCAATAAGATAAACTTTGTGATGAAACTACCGCTAATAT
CGGGCTATTTCCAATTATTTAAAACTTATTTTGTAACTAATGAATTAGTGTTGTTTTATAAAAATGGTATTACACTTCAA
TCAATAGTAGACGTTTATATTAACCATAGTAGTGATCCATTTAGACAGTTTCTAGGTAAATACTTATTAACTTATTCAGA
AATGGGATATGGTTTACCTCAAATTTTAGAAAAACTAAAATGCTTTAAGCCTCAATTAATTAAGTTTGTGCTACAAGGTG
AAAAGAGAGGAAAGCTAGAAGTAGAACTAAAGCTATATTCGCAAATATTAGTGAGGCAAATAGAGGATAAAGAGATAAAA
CAGACTCAGTTTTTACAGCCTATTTTATTTTTGATTTTAGGTTTATTTATTGTCGCAATTTATTTAGTAATTATGTTACC
AATGTTTCAAATGATGCAAAGTATAAAATAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(28-146)

Type II secretion system (T2SS), protein F (T2SSF)

(227-347)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGB Staphylococcus aureus MW2

98.596

100

0.986
  comGB Staphylococcus aureus N315

98.596

100

0.986