Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGE   Type   Machinery gene
Locus tag   N4T05_RS07670 Genome accession   NZ_CP104559
Coordinates   1596426..1596725 (-) Length   99 a.a.
NCBI ID   WP_000844413.1    Uniprot ID   X5E258
Organism   Staphylococcus aureus strain SA2107     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1591426..1601725
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  N4T05_RS07645 (N4T05_07645) gcvPA 1592638..1593984 (-) 1347 WP_252301764.1 aminomethyl-transferring glycine dehydrogenase subunit GcvPA -
  N4T05_RS07650 (N4T05_07650) gcvT 1594004..1595095 (-) 1092 WP_000093344.1 glycine cleavage system aminomethyltransferase GcvT -
  N4T05_RS07655 (N4T05_07655) - 1595254..1595778 (-) 525 WP_001015120.1 shikimate kinase -
  N4T05_RS07660 (N4T05_07660) - 1595768..1595914 (-) 147 WP_234739881.1 hypothetical protein -
  N4T05_RS07665 (N4T05_07665) comGF 1596011..1596508 (-) 498 WP_001796472.1 competence type IV pilus minor pilin ComGF Machinery gene
  N4T05_RS07670 (N4T05_07670) comGE 1596426..1596725 (-) 300 WP_000844413.1 hypothetical protein Machinery gene
  N4T05_RS07675 (N4T05_07675) comGD 1596712..1597158 (-) 447 WP_001796473.1 competence type IV pilus minor pilin ComGD Machinery gene
  N4T05_RS07680 (N4T05_07680) comGC 1597136..1597447 (-) 312 WP_000472255.1 competence type IV pilus major pilin ComGC Machinery gene
  N4T05_RS07685 (N4T05_07685) comGB 1597461..1598531 (-) 1071 WP_261722542.1 competence type IV pilus assembly protein ComGB Machinery gene
  N4T05_RS07690 (N4T05_07690) comGA 1598503..1599477 (-) 975 WP_000697220.1 competence type IV pilus ATPase ComGA Machinery gene
  N4T05_RS07695 (N4T05_07695) - 1599529..1600152 (-) 624 WP_001223009.1 MBL fold metallo-hydrolase -
  N4T05_RS07700 (N4T05_07700) - 1600149..1600478 (-) 330 WP_001018871.1 MTH1187 family thiamine-binding protein -
  N4T05_RS07705 (N4T05_07705) - 1600478..1601464 (-) 987 WP_000161307.1 ROK family glucokinase -
  N4T05_RS07710 (N4T05_07710) - 1601461..1601664 (-) 204 WP_000087561.1 YqgQ family protein -

Sequence

Protein


Download         Length: 99 a.a.        Molecular weight: 11093.20 Da        Isoelectric Point: 9.9215

>NTDB_id=730560 N4T05_RS07670 WP_000844413.1 1596426..1596725(-) (comGE) [Staphylococcus aureus strain SA2107]
MKSYKCKGSFLIDSMAGFLLIGLITLLLIPMMNQMQASINHKLQTIDASKVILTTVSKINKEELKKGVTIGKYDIKQSDQ
QICAISKNTTSYQKTCIQY

Nucleotide


Download         Length: 300 bp        

>NTDB_id=730560 N4T05_RS07670 WP_000844413.1 1596426..1596725(-) (comGE) [Staphylococcus aureus strain SA2107]
ATGAAAAGCTATAAGTGTAAAGGATCATTCTTAATAGATAGTATGGCTGGATTTTTGCTAATTGGATTGATTACATTACT
ATTGATACCAATGATGAATCAAATGCAAGCGAGTATAAACCATAAACTACAAACAATTGATGCTTCTAAAGTAATTTTGA
CGACTGTATCTAAAATTAATAAAGAAGAACTTAAGAAGGGGGTAACTATAGGGAAATATGATATTAAGCAAAGTGACCAA
CAAATATGTGCCATTTCAAAAAATACCACTTCTTATCAAAAGACATGTATACAGTATTAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB X5E258

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGE Staphylococcus aureus MW2

86.842

100

1
  comGE Staphylococcus aureus N315

98.99

100

0.99