Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGA   Type   Machinery gene
Locus tag   N5C46_RS23130 Genome accession   NZ_CP104558
Coordinates   4504119..4504484 (+) Length   121 a.a.
NCBI ID   WP_261750408.1    Uniprot ID   -
Organism   Rossellomorea vietnamensis strain RL-WG62     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 4499119..4509484
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  N5C46_RS23095 (N5C46_23095) - 4499199..4499417 (-) 219 WP_261750401.1 hypothetical protein -
  N5C46_RS23100 (N5C46_23100) - 4499609..4499800 (-) 192 WP_261750402.1 hypothetical protein -
  N5C46_RS23105 (N5C46_23105) - 4499955..4502039 (+) 2085 WP_261750403.1 cell wall-binding repeat-containing protein -
  N5C46_RS23110 (N5C46_23110) - 4502029..4502280 (+) 252 WP_261750404.1 DUF3006 domain-containing protein -
  N5C46_RS23115 (N5C46_23115) - 4502350..4502541 (-) 192 WP_261750405.1 hypothetical protein -
  N5C46_RS23120 (N5C46_23120) - 4502891..4503217 (+) 327 WP_261750406.1 hypothetical protein -
  N5C46_RS23125 (N5C46_23125) - 4503288..4503926 (+) 639 WP_261750407.1 hypothetical protein -
  N5C46_RS23130 (N5C46_23130) comGA 4504119..4504484 (+) 366 WP_261750408.1 ATPase, T2SS/T4P/T4SS family Machinery gene
  N5C46_RS23135 (N5C46_23135) comGB 4504468..4505490 (+) 1023 WP_261750409.1 competence type IV pilus assembly protein ComGB -
  N5C46_RS23140 (N5C46_23140) comGC 4505500..4505829 (+) 330 WP_261752417.1 competence type IV pilus major pilin ComGC -
  N5C46_RS23145 (N5C46_23145) comGD 4505870..4506271 (+) 402 WP_261750410.1 competence type IV pilus minor pilin ComGD -
  N5C46_RS23150 (N5C46_23150) - 4506255..4506581 (+) 327 WP_261750411.1 type II secretion system protein -
  N5C46_RS23155 (N5C46_23155) comGF 4506481..4507014 (+) 534 WP_261750412.1 competence type IV pilus minor pilin ComGF -
  N5C46_RS23160 (N5C46_23160) - 4507367..4507867 (+) 501 WP_261750413.1 shikimate kinase -
  N5C46_RS23165 (N5C46_23165) - 4507924..4508103 (+) 180 WP_034757956.1 YqzE family protein -
  N5C46_RS23170 (N5C46_23170) - 4508183..4508974 (-) 792 WP_261750414.1 YqhG family protein -

Sequence

Protein


Download         Length: 121 a.a.        Molecular weight: 13787.05 Da        Isoelectric Point: 8.6421

>NTDB_id=730540 N5C46_RS23130 WP_261750408.1 4504119..4504484(+) (comGA) [Rossellomorea vietnamensis strain RL-WG62]
MISTLHTRDAKGAIYRLMELGIEWHDIEQTLLAVSAQRLLKLLCPICKAECGGQCLRGKNRNRASVYEIITGSALKEVLK
EAKGERAEHQYHTLQALICKGVALGFVSEHEYRKWVHEEKR

Nucleotide


Download         Length: 366 bp        

>NTDB_id=730540 N5C46_RS23130 WP_261750408.1 4504119..4504484(+) (comGA) [Rossellomorea vietnamensis strain RL-WG62]
GTGATTTCCACCCTGCATACAAGGGACGCAAAAGGGGCGATATATCGCTTGATGGAACTGGGAATCGAGTGGCATGATAT
CGAACAGACGCTGCTCGCTGTATCTGCTCAGAGATTGCTGAAGCTCCTCTGTCCGATCTGCAAAGCGGAATGTGGCGGTC
AATGTCTTAGAGGGAAGAACCGAAACAGGGCATCTGTCTATGAGATCATTACGGGTAGTGCATTGAAGGAAGTATTGAAG
GAAGCGAAGGGTGAGAGGGCAGAACATCAGTACCATACATTGCAGGCTTTAATTTGTAAGGGGGTGGCACTCGGATTTGT
TTCAGAACATGAATATAGGAAATGGGTTCATGAAGAAAAGCGATGA

Domains

Predicted by InterproScan.

Type II/IV secretion system protein (T2SSE)

(2-41)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGA Bacillus subtilis subsp. subtilis str. 168

49.587

100

0.496