Detailed information    

insolico Bioinformatically predicted

Overview

Name   sbcB   Type   Machinery gene
Locus tag   GZI12_RS07605 Genome accession   NZ_AP019651
Coordinates   1609681..1611099 (+) Length   472 a.a.
NCBI ID   WP_162046450.1    Uniprot ID   -
Organism   Vibrio taketomensis strain C4III291     
Function   promote homologous recombination (predicted from homology)   
Homologous recombination

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
Genomic island 1606797..1616690 1609681..1611099 within 0


Gene organization within MGE regions


Location: 1606797..1616690
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GZI12_RS20465 - 1606797..1608026 (-) 1230 WP_232060977.1 bifunctional diguanylate cyclase/phosphodiesterase -
  GZI12_RS20470 - 1607969..1609270 (-) 1302 WP_232060891.1 PAS domain-containing protein -
  GZI12_RS07605 sbcB 1609681..1611099 (+) 1419 WP_162046450.1 exodeoxyribonuclease I Machinery gene
  GZI12_RS07610 - 1611133..1611498 (+) 366 WP_162046451.1 CidA/LrgA family protein -
  GZI12_RS07615 - 1611498..1612171 (+) 674 Protein_1429 LrgB family protein -
  GZI12_RS07620 cdd 1612366..1613253 (+) 888 WP_162046452.1 cytidine deaminase -
  GZI12_RS07625 - 1613332..1614573 (-) 1242 WP_162046453.1 HD-GYP domain-containing protein -
  GZI12_RS07630 - 1614893..1615366 (-) 474 WP_162046454.1 response regulator -
  GZI12_RS07635 - 1615368..1616690 (-) 1323 WP_162046455.1 ATP-binding protein -

Sequence

Protein


Download         Length: 472 a.a.        Molecular weight: 54430.68 Da        Isoelectric Point: 4.9976

>NTDB_id=73047 GZI12_RS07605 WP_162046450.1 1609681..1611099(+) (sbcB) [Vibrio taketomensis strain C4III291]
MQHQPTFFFFDYETWGTSPAKDRPSQFAGVRTDMDFNIVGEPVVIYCQPPSDYLPSPEAALITGITPQTAVAKGLSEPEF
IAQIHQQLATPNTISLGYNSIRFDDEVTRYTCYRNFFDPYAWSWQNGNSRWDLLDVMRACHALRPEGIEWPENEDGFTSF
KLEHLSVANGIEHSNAHDAMADVIATIEMAKKIKAAQPKLFDYFLSMRHKKKLNELIDIVNMTPLMHVSGMLGRECHYTS
WIVPVAWHPTNQNAVIVVDLAKDPKPLLELDADALRERLYTKHTDLAEDELPVPVKLVHINKCPILAPAKTLTAENAGKI
GINREQCLENLQLLRQHPELREKLIGLFATEREYETQNDVDTQLYDNFFSPADRAAMDIIRQTPAEQLADLDLEYSDARI
APLLFRYRARNHPWTLNENEQLRWQNHCQDYFQSRIDDYMINLENLVHEHESDEKKIALLKSVYQYVEKLVL

Nucleotide


Download         Length: 1419 bp        

>NTDB_id=73047 GZI12_RS07605 WP_162046450.1 1609681..1611099(+) (sbcB) [Vibrio taketomensis strain C4III291]
ATGCAGCATCAGCCAACGTTTTTCTTTTTTGACTATGAAACGTGGGGAACGAGCCCAGCGAAGGATCGACCGAGTCAATT
CGCGGGTGTTCGTACCGATATGGATTTCAATATTGTTGGCGAACCTGTTGTAATTTACTGCCAACCTCCAAGCGATTACT
TGCCTTCTCCAGAGGCTGCGTTGATCACGGGTATTACTCCTCAAACCGCCGTTGCTAAAGGGTTATCAGAGCCTGAATTT
ATCGCACAAATTCATCAGCAGCTTGCAACACCAAATACCATTAGCCTTGGCTATAACAGTATTCGTTTTGATGATGAAGT
GACTCGATATACTTGCTACCGCAACTTCTTTGACCCATACGCTTGGAGCTGGCAAAACGGCAATTCTCGTTGGGATCTAT
TGGATGTCATGCGCGCTTGTCATGCGTTGCGCCCAGAAGGGATCGAGTGGCCAGAAAACGAAGACGGCTTTACGAGTTTT
AAGCTCGAACATCTATCCGTCGCTAATGGCATTGAACATAGCAATGCTCACGATGCAATGGCTGACGTTATTGCCACTAT
CGAAATGGCGAAAAAGATCAAAGCGGCACAGCCAAAGCTGTTCGATTATTTCTTATCAATGCGCCACAAGAAAAAGCTCA
ATGAGTTAATTGATATCGTAAATATGACCCCTCTAATGCACGTATCAGGCATGCTGGGTCGCGAGTGTCATTATACCAGT
TGGATCGTCCCTGTTGCGTGGCACCCAACCAATCAAAATGCAGTTATTGTCGTTGATTTAGCCAAAGATCCCAAACCACT
ACTAGAGCTTGATGCTGACGCATTGAGAGAACGCCTATACACCAAACATACTGACCTAGCAGAAGACGAGCTACCAGTAC
CTGTTAAACTGGTGCATATCAACAAATGCCCTATTCTCGCTCCGGCTAAAACACTCACGGCAGAAAACGCAGGAAAAATC
GGCATCAATCGCGAACAGTGTTTAGAAAACCTGCAGCTTCTGCGTCAACATCCAGAATTGCGTGAAAAACTAATCGGTTT
ATTCGCAACAGAACGTGAATATGAAACGCAAAACGATGTTGATACTCAGCTATACGATAACTTCTTTTCACCAGCCGATC
GCGCAGCGATGGACATTATTCGTCAAACACCAGCAGAGCAGTTAGCTGATCTTGATCTGGAATATAGTGATGCGCGTATC
GCCCCACTATTGTTTAGATATCGTGCTCGTAACCACCCATGGACGCTCAACGAAAACGAACAACTTCGTTGGCAAAATCA
CTGTCAGGATTACTTCCAAAGTCGCATAGACGACTACATGATAAATCTTGAAAACTTAGTTCATGAACATGAAAGTGATG
AAAAGAAAATCGCTCTATTAAAATCCGTCTATCAATATGTCGAGAAACTTGTTCTCTAG

Domains

Predicted by InterproScan.

Exonuclease C-terminal (Exonuc_X-T_C)

(208-468)

Exonuclease (RNase_T)

(9-188)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sbcB Vibrio cholerae O1 biovar El Tor strain E7946

78.511

99.576

0.782

Multiple sequence alignment