Detailed information    

insolico Bioinformatically predicted

Overview

Name   cqsA   Type   Regulator
Locus tag   N5E84_RS20365 Genome accession   NZ_CP104555
Coordinates   962693..963874 (+) Length   393 a.a.
NCBI ID   WP_017050024.1    Uniprot ID   -
Organism   Vibrio sp. J502     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 957693..968874
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  N5E84_RS20350 (N5E84_20350) - 958493..959479 (-) 987 WP_010320211.1 CobW family GTP-binding protein -
  N5E84_RS20355 (N5E84_20355) clcA 959973..961370 (+) 1398 WP_013868492.1 H(+)/Cl(-) exchange transporter ClcA -
  N5E84_RS20360 (N5E84_20360) - 961519..962493 (+) 975 WP_019282130.1 TDT family transporter -
  N5E84_RS20365 (N5E84_20365) cqsA 962693..963874 (+) 1182 WP_017050024.1 alpha-hydroxyketone-type quorum-sensing autoinducer synthase Regulator
  N5E84_RS20370 (N5E84_20370) cqsS 963961..966012 (-) 2052 WP_013868489.1 hybrid sensor histidine kinase/response regulator Regulator

Sequence

Protein


Download         Length: 393 a.a.        Molecular weight: 43529.33 Da        Isoelectric Point: 6.6121

>NTDB_id=730467 N5E84_RS20365 WP_017050024.1 962693..963874(+) (cqsA) [Vibrio sp. J502]
MNSRKWKHELPASIQSRIDYFINDLINANANGKHLVLGKRPTKNDIVLQSNDYLSLADHPLIKARLKNAIDKTHDSVFMS
AIFLQDEESKPSLETKFAEFVGFDSCLLSQSGWNANTALLQAVCGPQSNVYIDFFAHMSMWEGARYANANIHPFMHNNCD
HLQKLIARHGPGLIVVDSIYSTIGTIAPLTDLVTIAKEYGCAILVDESHSLGTHGEKGAGLVSELGLTAEVDFITASLAK
TFAYRAGAIWANNNVNHCIPFVGYPAIFSSTILPYEVEALEATLDIIKSADSKRTQLHRNAHTLRRGLNSIGLSVRSESQ
IIALETGDERNTEKVRDYLEENQIFGAVFCRPATSKNKNIIRLSLNSNVTDSQIDTILTVCERAQNDSSLYFK

Nucleotide


Download         Length: 1182 bp        

>NTDB_id=730467 N5E84_RS20365 WP_017050024.1 962693..963874(+) (cqsA) [Vibrio sp. J502]
ATGAATTCACGTAAGTGGAAACACGAACTACCGGCTTCTATACAATCTAGAATTGACTATTTTATCAATGACTTGATTAA
TGCAAATGCTAACGGAAAACATCTAGTCCTAGGGAAAAGGCCAACAAAAAACGACATAGTGTTACAAAGTAATGATTATT
TAAGCTTGGCTGATCATCCATTAATTAAAGCACGGCTGAAAAATGCCATCGATAAAACACATGATAGTGTTTTTATGTCC
GCTATTTTTCTACAAGATGAAGAGTCTAAACCTTCATTAGAAACGAAATTTGCAGAATTTGTAGGCTTTGATAGTTGCCT
TCTTTCTCAATCAGGATGGAATGCTAATACAGCCTTGTTGCAAGCCGTGTGCGGGCCACAAAGTAACGTCTACATTGACT
TTTTTGCTCACATGTCAATGTGGGAAGGTGCTCGCTATGCTAATGCCAATATTCACCCATTCATGCACAATAATTGTGAT
CATTTACAAAAACTGATCGCTCGACACGGCCCAGGGCTCATCGTGGTTGATTCGATTTACAGCACTATCGGTACGATTGC
ACCACTCACCGATTTGGTCACTATCGCCAAAGAGTATGGATGCGCCATTTTAGTTGATGAGTCGCATTCACTTGGCACAC
ATGGCGAAAAAGGTGCAGGACTTGTCAGTGAATTAGGGTTAACAGCAGAGGTTGACTTTATTACAGCTAGCCTTGCAAAA
ACATTCGCGTATCGCGCTGGCGCTATTTGGGCGAATAATAATGTGAATCACTGTATCCCTTTTGTGGGTTATCCCGCTAT
TTTTAGTTCAACTATTTTGCCTTATGAAGTCGAAGCGTTAGAAGCGACATTGGACATTATCAAATCAGCCGATTCTAAAA
GAACTCAGTTGCACCGCAATGCACACACACTGCGTCGTGGACTAAATAGTATAGGGCTAAGCGTACGAAGTGAGTCCCAA
ATCATAGCGCTAGAAACCGGAGATGAACGAAATACAGAAAAAGTTCGCGATTATTTAGAAGAGAATCAAATATTTGGTGC
TGTTTTTTGCAGGCCTGCCACTTCAAAGAATAAAAACATTATTCGGCTTTCGTTAAATAGTAATGTCACTGACTCACAAA
TTGATACCATATTAACTGTGTGTGAAAGGGCCCAAAATGATAGCAGTCTCTATTTCAAGTAA

Domains

Predicted by InterproScan.

Aminotransferase class I and II (Aminotran_1_2)

(44-378)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cqsA Vibrio cholerae strain A1552

68.734

98.473

0.677