Detailed information    

insolico Bioinformatically predicted

Overview

Name   rpoS   Type   Regulator
Locus tag   N5E84_RS10565 Genome accession   NZ_CP104554
Coordinates   2302465..2303466 (-) Length   333 a.a.
NCBI ID   WP_017047531.1    Uniprot ID   -
Organism   Vibrio sp. J502     
Function   regulation of chitinases (predicted from homology)   
Competence regulation

Genomic Context

Location: 2297465..2308466
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  N5E84_RS10555 (N5E84_10555) cysM 2298611..2299501 (+) 891 WP_029388150.1 cysteine synthase CysM -
  N5E84_RS10560 (N5E84_10560) mutS 2299744..2302332 (+) 2589 WP_029388151.1 DNA mismatch repair protein MutS -
  N5E84_RS10565 (N5E84_10565) rpoS 2302465..2303466 (-) 1002 WP_017047531.1 RNA polymerase sigma factor RpoS Regulator
  N5E84_RS10570 (N5E84_10570) nlpD 2303539..2304471 (-) 933 WP_041769244.1 murein hydrolase activator NlpD -
  N5E84_RS10575 (N5E84_10575) - 2304477..2305103 (-) 627 WP_013857716.1 protein-L-isoaspartate(D-aspartate) O-methyltransferase -
  N5E84_RS10580 (N5E84_10580) surE 2305103..2305849 (-) 747 WP_010320454.1 5'/3'-nucleotidase SurE -
  N5E84_RS10585 (N5E84_10585) truD 2305862..2306959 (-) 1098 WP_019281913.1 tRNA pseudouridine(13) synthase TruD -
  N5E84_RS10590 (N5E84_10590) ispF 2307114..2307599 (-) 486 WP_013857718.1 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase -
  N5E84_RS10595 (N5E84_10595) ispD 2307592..2308323 (-) 732 WP_010320457.1 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase -

Sequence

Protein


Download         Length: 333 a.a.        Molecular weight: 38272.18 Da        Isoelectric Point: 4.4454

>NTDB_id=730444 N5E84_RS10565 WP_017047531.1 2302465..2303466(-) (rpoS) [Vibrio sp. J502]
MSISNAVTKVEEFEDQEIMDSIEVDEELTTTKSQSDDDVQIEDAKEGFDASTKSLDATQMYLSEIGFSPLLTAQEEVLYA
RRSLRGDEAARKRMIESNLRLVVKISRRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERALMN
QTRTIRLPIHVVKELNIYLRTARELSQKLDHEPTAEEIAFQLDKPVEDVSKMLRLNERISSVDTPIGGDGDKALLDIIPD
ANNSDPEISTQDDDIRESLLNWLDELNPKQKEVLARRFGLLGYEPSTLEEVGREINLTRERVRQIQVEGLRRLREILVKQ
GLNMEALFNVEYD

Nucleotide


Download         Length: 1002 bp        

>NTDB_id=730444 N5E84_RS10565 WP_017047531.1 2302465..2303466(-) (rpoS) [Vibrio sp. J502]
ATGAGTATCAGCAATGCAGTAACGAAAGTCGAAGAGTTTGAAGACCAAGAGATCATGGATTCGATTGAGGTTGATGAAGA
ACTCACCACCACTAAAAGCCAAAGCGATGACGATGTTCAAATCGAAGATGCCAAAGAAGGATTTGATGCGTCAACAAAAA
GCTTAGATGCAACACAGATGTATCTTAGCGAGATTGGTTTTTCTCCATTATTAACAGCTCAAGAAGAAGTACTTTATGCT
CGTCGTTCACTGAGAGGCGATGAAGCTGCTCGTAAACGCATGATCGAAAGTAACTTACGTTTGGTCGTTAAAATTTCTCG
CCGTTATGGTAATCGTGGCTTAGCTTTACTCGATCTAATTGAAGAGGGTAATTTAGGCTTGATTCGTGCGGTAGAAAAAT
TTGATCCAGAACGTGGCTTTAGATTCTCAACCTATGCTACTTGGTGGATCCGTCAAACCATTGAACGTGCATTAATGAAC
CAAACGCGCACTATCCGTTTGCCAATTCACGTCGTTAAAGAGTTGAATATCTACCTTCGCACGGCTCGCGAGCTATCGCA
GAAGTTAGATCATGAACCTACCGCAGAAGAAATTGCGTTCCAACTGGATAAGCCAGTAGAAGATGTCAGTAAAATGCTGC
GTCTGAACGAGCGTATCAGTTCTGTTGATACACCGATTGGCGGCGATGGTGATAAAGCACTACTCGATATCATCCCAGAT
GCGAACAACTCTGATCCTGAAATTTCTACGCAAGATGATGATATCCGTGAATCACTACTGAATTGGTTAGATGAACTAAA
CCCAAAACAAAAAGAGGTACTTGCACGCCGTTTTGGGCTATTAGGTTATGAACCGTCCACCTTAGAAGAGGTAGGCCGCG
AAATTAACTTAACCCGTGAACGAGTTCGTCAAATTCAAGTGGAAGGCCTACGTCGTTTGAGAGAGATCTTGGTTAAACAA
GGCTTGAACATGGAAGCGCTGTTTAATGTTGAATACGACTAA

Domains

Predicted by InterproScan.

Sigma-70 region 3 (Sigma70_r3)

(174-247)

Sigma-70, region 4 (Sigma70_r4)

(262-315)

Sigma-70 factor, region 1.2 (Sigma70_r1_2)

(56-89)

Sigma-70 region 2 (Sigma70_r2)

(94-163)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rpoS Vibrio cholerae O1 biovar El Tor strain E7946

86.826

100

0.871