Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxS   Type   Regulator
Locus tag   N5E84_RS10425 Genome accession   NZ_CP104554
Coordinates   2276370..2276888 (-) Length   172 a.a.
NCBI ID   WP_010319518.1    Uniprot ID   A0A233HL62
Organism   Vibrio sp. J502     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 2271370..2281888
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  N5E84_RS10400 (N5E84_10400) rimM 2271400..2271954 (-) 555 WP_013857691.1 ribosome maturation factor RimM -
  N5E84_RS10405 (N5E84_10405) rpsP 2271984..2272232 (-) 249 WP_010319522.1 30S ribosomal protein S16 -
  N5E84_RS10410 (N5E84_10410) ffh 2272447..2273829 (-) 1383 WP_019281904.1 signal recognition particle protein -
  N5E84_RS10415 (N5E84_10415) - 2274135..2274929 (+) 795 WP_026027563.1 inner membrane protein YpjD -
  N5E84_RS10420 (N5E84_10420) - 2275013..2276287 (+) 1275 WP_017045776.1 HlyC/CorC family transporter -
  N5E84_RS10425 (N5E84_10425) luxS 2276370..2276888 (-) 519 WP_010319518.1 S-ribosylhomocysteine lyase Regulator
  N5E84_RS10430 (N5E84_10430) gshA 2276953..2278518 (-) 1566 WP_026027564.1 glutamate--cysteine ligase -
  N5E84_RS10435 (N5E84_10435) - 2278621..2281476 (-) 2856 WP_069212070.1 M16 family metallopeptidase -

Sequence

Protein


Download         Length: 172 a.a.        Molecular weight: 18955.76 Da        Isoelectric Point: 5.2114

>NTDB_id=730441 N5E84_RS10425 WP_010319518.1 2276370..2276888(-) (luxS) [Vibrio sp. J502]
MPLLDSFTVDHTRMHAPAVRVAKNMQTPKGDTITVFDLRFTAPNKDILSEKGIHTLEHLYAGFMRAHLNGHDVEIIDISP
MGCRTGFYMSLIGAPTEAQVAQAWLAAMHDVLKVESQDQIPELNEYQCGTASMHSLTEAKEIAQAIITAGIAVNKNDELA
LPESMLKELKVD

Nucleotide


Download         Length: 519 bp        

>NTDB_id=730441 N5E84_RS10425 WP_010319518.1 2276370..2276888(-) (luxS) [Vibrio sp. J502]
ATGCCATTACTCGACAGTTTTACTGTAGATCACACTCGTATGCATGCGCCTGCGGTACGTGTGGCAAAAAATATGCAGAC
GCCTAAAGGGGATACAATCACCGTATTTGATCTCCGTTTTACTGCTCCAAACAAAGATATTCTTTCGGAAAAAGGGATCC
ACACTTTAGAGCATTTATACGCTGGCTTTATGCGCGCGCACTTAAATGGTCATGATGTAGAAATCATCGACATCTCACCT
ATGGGCTGCCGCACAGGTTTTTACATGAGTTTGATTGGCGCGCCAACAGAAGCGCAAGTGGCGCAAGCGTGGTTAGCGGC
GATGCATGATGTGCTAAAAGTAGAGAGCCAAGATCAGATCCCTGAACTAAACGAATACCAATGTGGTACAGCCTCAATGC
ACTCGTTAACAGAAGCTAAAGAGATTGCTCAAGCGATTATCACGGCAGGTATTGCGGTGAATAAAAATGATGAGCTTGCT
TTACCTGAGTCGATGCTCAAAGAGCTGAAAGTGGATTAA

Domains

Predicted by InterproScan.

S-Ribosylhomocysteinase (LuxS) (LuxS)

(4-153)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A233HL62

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxS Vibrio cholerae strain A1552

88.304

99.419

0.878