Detailed information NTG0730427

Bioinformatically predicted

Overview

• Name: sbcB
• Type: Machinery gene
• Locus tag: N5E84_RS04590
• Genome accession: NZ_CP104554
• Coordinates: 948728..950152 (-)
• Length: 474 a.a.
• NCBI ID: WP_069211963.1
• Uniprot ID: A0A289GCC7
• Organism: Vibrio sp. J502
• Function: promote homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 943728..955152

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
N5E84_RS04575 (N5E84_04575)	cdd	946495..947382 (-)	888	WP_019282580.1	cytidine deaminase	-
N5E84_RS04580 (N5E84_04580)	-	947591..948271 (-)	681	WP_010319624.1	CidB/LrgB family autolysis modulator	-
N5E84_RS04585 (N5E84_04585)	-	948271..948603 (-)	333	WP_033197434.1	CidA/LrgA family protein	-
N5E84_RS04590 (N5E84_04590)	sbcB	948728..950152 (-)	1425	WP_069211963.1	exodeoxyribonuclease I	Machinery gene
N5E84_RS04595 (N5E84_04595)	-	950304..951671 (-)	1368	WP_029388301.1	L-cystine transporter	-
N5E84_RS04600 (N5E84_04600)	-	951892..952575 (-)	684	WP_019282578.1	NAD(P)H-binding protein	-
N5E84_RS04605 (N5E84_04605)	-	952792..954750 (+)	1959	WP_069211964.1	methyl-accepting chemotaxis protein	-

Sequence

Protein

• Length: 474 a.a.
• Molecular weight: 54677.13 Da
• Isoelectric Point: 5.4372

>NTDB_id=730427 N5E84_RS04590 WP_069211963.1 948728..950152(-) (sbcB) [Vibrio sp. J502]
MRQEHPPTFFFLDYETWGVNPAKDRPSQFAGVRTDMDFNIIGEPLVIYCQPPTDYLPSPEAALITGITPQKAVAQGLPEP
EFIAKIHQQLATPNTTSLGYNSIRFDDEVTRYTCYRNFIDPYAWSWQNGNSRWDLLDVMRACHALRPEGINWPENDEGFT
SFKLEHLSVANGIEHANAHDAMADVIATIELAKKVKAAQPKLFDYFFNMRHKRKLNDLIDIVNMTPLMHVSGMLGRECQY
TSWIVPIAWHPTNQNAVIVVDLAKNPQPLIDLSSEELHQRLYTKREELAEDELPVPIKLVHLNKCPILAPAKTLTAENAD
HIGVDRNLCLEHLALIKQYPEIRERLIGLYTIEREYKHSDDVDTQLYDGFFSPADKAAMEIIRQADPVNLAALDISFSDK
RIEPLLFRYRARHYPLTLSDEEQRRWATHCRDYFESHLEEYMLNLENLVHTHSSDEKKMAILKSVYRYVEDIAS

Nucleotide

• Length: 1425 bp

>NTDB_id=730427 N5E84_RS04590 WP_069211963.1 948728..950152(-) (sbcB) [Vibrio sp. J502]
ATGCGACAAGAGCACCCGCCTACTTTCTTTTTCCTCGACTATGAGACGTGGGGAGTCAACCCTGCGAAAGATCGTCCGAG
CCAATTTGCGGGCGTTCGCACCGATATGGATTTTAATATTATTGGCGAACCACTGGTTATCTATTGCCAACCACCAACGG
ACTATTTGCCTTCTCCAGAAGCGGCGCTTATTACGGGTATCACACCACAAAAAGCGGTGGCCCAAGGCTTGCCAGAGCCT
GAATTTATCGCCAAAATTCATCAACAACTCGCCACACCCAACACCACCAGTCTTGGTTACAACAGTATTCGTTTTGATGA
TGAAGTAACGCGTTACACTTGCTATCGTAATTTCATTGATCCGTATGCTTGGAGCTGGCAAAACGGCAATTCACGCTGGG
ATTTACTTGATGTGATGCGCGCCTGCCATGCGCTACGTCCAGAAGGCATCAACTGGCCCGAAAATGACGAAGGCTTTACC
AGTTTTAAGTTGGAGCATCTCTCGGTTGCCAATGGCATCGAACACGCAAATGCCCACGATGCTATGGCCGATGTTATCGC
CACCATTGAGCTGGCCAAAAAAGTAAAAGCCGCCCAACCCAAGTTGTTTGATTACTTTTTTAACATGCGCCATAAACGCA
AACTCAATGATCTGATTGATATCGTCAACATGACACCTTTAATGCACGTATCGGGTATGTTAGGCCGAGAATGCCAATAC
ACCAGTTGGATCGTGCCGATTGCTTGGCATCCCACCAATCAAAATGCGGTTATTGTGGTGGACCTTGCCAAAAACCCTCA
ACCCCTGATCGATTTAAGCAGCGAAGAACTGCATCAACGTCTATATACCAAACGCGAAGAGTTGGCAGAAGATGAATTGC
CAGTGCCCATCAAATTAGTGCATCTCAATAAATGCCCTATCCTTGCGCCGGCCAAAACATTAACGGCCGAAAATGCAGAC
CATATCGGGGTCGATAGAAACCTGTGCCTTGAACACTTAGCGCTCATCAAGCAGTACCCTGAGATCAGAGAAAGGCTGAT
TGGCCTCTACACAATTGAGCGAGAATATAAGCACAGTGACGATGTCGATACTCAACTCTACGACGGTTTCTTCTCTCCCG
CCGACAAAGCGGCGATGGAGATCATTCGCCAAGCTGACCCTGTCAACCTCGCCGCATTAGACATTAGTTTTAGCGATAAG
CGCATCGAACCCTTGCTGTTTCGCTACCGCGCTCGCCATTACCCATTGACATTAAGTGACGAAGAGCAAAGGCGTTGGGC
AACTCACTGTCGTGATTATTTCGAAAGCCACCTTGAAGAGTACATGCTCAATTTAGAGAACTTAGTTCACACCCACAGCA
GTGACGAAAAGAAAATGGCTATTTTAAAATCCGTTTACCGTTATGTCGAAGACATCGCGAGTTAA

Domains

Predicted by InterproScan.

• Exonuclease C-terminal (Exonuc_X-T_C) (210-470)

• Exonuclease (RNase_T) (11-191)

3D structure

• AlphaFold DB: A0A289GCC7

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
sbcB	Vibrio cholerae O1 biovar El Tor strain E7946	81.184	99.789	0.81