Detailed information    

insolico Bioinformatically predicted

Overview

Name   tfoS   Type   Regulator
Locus tag   N5E84_RS02885 Genome accession   NZ_CP104554
Coordinates   573917..577279 (+) Length   1120 a.a.
NCBI ID   WP_069212008.1    Uniprot ID   -
Organism   Vibrio sp. J502     
Function   chitin sensor (predicted from homology)   
Competence regulation

Genomic Context

Location: 568917..582279
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  N5E84_RS02860 (N5E84_02860) sucC 569111..570277 (+) 1167 WP_013856351.1 ADP-forming succinate--CoA ligase subunit beta -
  N5E84_RS02865 (N5E84_02865) sucD 570277..571149 (+) 873 WP_013856352.1 succinate--CoA ligase subunit alpha -
  N5E84_RS02870 (N5E84_02870) znuB 571227..572006 (-) 780 WP_013856353.1 zinc ABC transporter permease subunit ZnuB -
  N5E84_RS02875 (N5E84_02875) znuC 571999..572781 (-) 783 WP_013856354.1 zinc ABC transporter ATP-binding protein ZnuC -
  N5E84_RS02880 (N5E84_02880) znuA 572866..573744 (+) 879 WP_017048516.1 zinc ABC transporter substrate-binding protein ZnuA -
  N5E84_RS02885 (N5E84_02885) tfoS 573917..577279 (+) 3363 WP_069212008.1 AraC family transcriptional regulator Regulator
  N5E84_RS02890 (N5E84_02890) - 578050..578277 (+) 228 WP_013856356.1 ferrous iron transport protein A -
  N5E84_RS02895 (N5E84_02895) feoB 578277..580550 (+) 2274 WP_013856357.1 Fe(2+) transporter permease subunit FeoB -
  N5E84_RS02900 (N5E84_02900) - 580547..580777 (+) 231 WP_010318896.1 FeoC-like transcriptional regulator -
  N5E84_RS02905 (N5E84_02905) - 580890..581318 (-) 429 WP_013856359.1 HIT family protein -

Sequence

Protein


Download         Length: 1120 a.a.        Molecular weight: 127888.64 Da        Isoelectric Point: 6.8114

>NTDB_id=730423 N5E84_RS02885 WP_069212008.1 573917..577279(+) (tfoS) [Vibrio sp. J502]
MKGKNDYFKPLLWILGFLTLLLAQGTQALDKAPSIFYPLPAQAQGKIFAAQNLFLGEEGGIWIHDVHGKVVFFDGQNILP
RRGSVLSQESENITYLNNAFWTFIDNELYRTYPAQDRELVFSLTPGIIIKKIGSSGNFIWLADETHFYTYHAQTHKLVTY
SFKEMYQLNQASRLIVNDAKFVLSKWVLATNAGVYLSDGESFSHVLSSGKNFIEKLYFSEKRRELVIGTLNGGLIIDVED
PKRQQKLVGDSHVLSVAETDQEYWIGTEDGLFVHSFLTGKTVKLESNDQDNNGLPGNKIYSLVNDLQGGIWIATDKGVRY
FSLFGQKFKRHSIAQLNNNPITKIVTRSDNKGYLFLTRQGLYQVDAEDWQEPKLIFPGEVHDVAQIDDHSLWIATHTGIV
IYHLQTKKMIETSVLPLKLRSNDTKHLEFDHEGLLWGATGNHLWSYQLADNSLTDFGSEWFVDAFLPAKIIKLKSTRRGI
FIGTDHGVYLFDKGKIVFLRATSHYGQSIDIFESSKGDVWFASAYGVFVLAHDRSDIRSIDMVEENISPKCLTETGNGIW
LTSSQGISLYNPMGEMVKHFGDPHGLMNNEFKSGVCESSIINNQQQLLLGSRFGLVTAWSSELTVATPPNTNIIFSQVNV
DHIPVMFGRGRFQTLELEYGSSISFLFGALPESRALSLEYRIAGDKEWQRLESAQLTLDHLLPGHYRLLVRNYSPNPQNS
MINSLSFIVDNPWYWSSWAIVLYLCLSIGLIAFASWWRSRWVTKVNRKLKAQVALKTDQLRHQSKIVLTNNQQLRKQLQI
RHIVVEQMLDSITPTLNQLIYRSQLHQLARLESLALKVKRELALLRNVRNDKTATQLLYDLSIILNSCVDGWREEFAKAN
ISLAVNNELKQAYIESAHFNLDIIFNTLLSDAVKRLYRNQELQIHCYEREKRLFIVMIDCGDQVQSINSDKRISGFELEE
MQLLVQRSGGEIHIFSSPERNLVELSWPSVELVSDAPEMIVVEEHSEDKSIDVTEKEWLKKVEKLVHNYYSDPEFSTSSA
AKSLFVSERSLQRRFKAITNKTFKEYLNEIRLEKACQYLLAGGKVAQVAFDCGFNDPSYFSQRFKHHFGLSPTQFVDDNE

Nucleotide


Download         Length: 3363 bp        

>NTDB_id=730423 N5E84_RS02885 WP_069212008.1 573917..577279(+) (tfoS) [Vibrio sp. J502]
TTGAAAGGAAAGAACGACTATTTTAAACCTTTGCTCTGGATCTTGGGTTTTCTGACGCTTTTATTAGCGCAGGGGACACA
AGCTCTAGACAAAGCACCTTCCATCTTCTATCCATTGCCAGCTCAGGCTCAAGGGAAAATTTTTGCCGCACAAAATTTGT
TTTTAGGTGAAGAAGGGGGAATTTGGATACACGATGTGCATGGCAAAGTGGTTTTCTTTGATGGACAAAACATCCTTCCC
CGGCGTGGCTCAGTGCTTTCACAAGAGAGCGAAAATATTACCTATCTTAATAACGCTTTTTGGACGTTCATTGATAATGA
ACTTTATCGAACTTATCCCGCACAAGATCGCGAATTAGTATTTAGCTTAACGCCTGGAATCATCATAAAAAAAATAGGTT
CGTCAGGTAATTTCATCTGGTTAGCCGATGAGACGCACTTTTATACATACCATGCGCAAACCCACAAGTTAGTTACTTAT
TCTTTTAAAGAAATGTATCAATTAAATCAAGCTAGTCGATTGATCGTTAATGATGCGAAGTTTGTGCTTTCTAAATGGGT
ATTAGCCACTAATGCTGGAGTCTATCTGTCAGATGGAGAGAGTTTTTCTCACGTGCTCAGCTCTGGTAAAAACTTCATTG
AGAAACTCTATTTTTCCGAGAAACGTAGAGAACTTGTGATTGGAACGCTCAATGGTGGGCTGATTATTGATGTCGAGGAC
CCAAAGCGCCAACAAAAGTTGGTTGGAGATTCCCATGTATTATCTGTTGCTGAGACAGATCAAGAGTATTGGATTGGTAC
TGAAGATGGATTATTTGTTCATTCGTTTTTGACAGGTAAAACCGTCAAGTTAGAAAGTAATGACCAAGACAATAATGGGT
TACCAGGCAATAAAATTTATTCATTGGTCAATGACTTACAAGGTGGGATTTGGATCGCAACGGATAAAGGTGTTCGTTAC
TTTTCTTTGTTTGGACAAAAATTTAAGCGCCATTCCATTGCACAGCTCAACAATAATCCCATAACAAAAATTGTGACAAG
GTCAGATAATAAAGGGTATTTGTTTTTAACTCGACAAGGGTTGTACCAAGTCGATGCTGAAGATTGGCAAGAGCCTAAAC
TTATTTTCCCTGGAGAAGTGCATGATGTCGCTCAAATAGATGATCATTCTCTATGGATAGCTACACATACAGGCATCGTT
ATTTATCACTTGCAGACAAAAAAGATGATAGAAACGAGCGTTTTACCTCTGAAGCTGCGTTCGAATGATACTAAACATCT
TGAATTTGATCATGAAGGACTGTTGTGGGGAGCAACAGGTAACCATTTGTGGTCATATCAGTTGGCCGATAACTCGCTAA
CCGATTTCGGTTCTGAATGGTTTGTTGATGCATTTTTGCCTGCAAAAATAATAAAACTTAAGTCAACTCGGCGAGGGATA
TTTATCGGCACTGACCATGGTGTTTATCTTTTTGACAAAGGCAAAATTGTTTTTCTCCGAGCGACTAGTCATTATGGACA
AAGCATTGATATATTTGAGAGTAGCAAGGGCGATGTTTGGTTTGCTAGTGCTTATGGTGTCTTTGTTTTGGCACATGATC
GTAGTGATATTCGATCTATTGATATGGTTGAAGAGAATATTAGCCCCAAATGTTTAACTGAAACGGGCAACGGTATTTGG
CTGACTTCCTCACAAGGAATCTCGCTCTACAATCCTATGGGTGAGATGGTAAAGCATTTTGGTGATCCACACGGATTGAT
GAATAATGAATTTAAAAGTGGAGTTTGCGAATCAAGTATTATCAATAACCAACAGCAGTTGCTGCTAGGTTCCCGTTTTG
GCTTAGTGACAGCATGGTCCTCTGAACTCACGGTTGCTACCCCTCCTAATACCAATATTATCTTTAGCCAAGTGAATGTC
GATCACATTCCTGTCATGTTCGGTCGTGGTCGTTTTCAGACACTAGAACTGGAATATGGAAGTTCGATAAGCTTTTTGTT
TGGTGCATTGCCAGAATCGAGAGCCTTATCATTGGAGTATCGTATTGCAGGGGATAAGGAGTGGCAGAGATTAGAAAGCG
CTCAGTTGACACTTGATCACCTATTACCTGGACACTATCGTTTGCTGGTGAGAAATTACAGTCCAAATCCGCAAAACAGT
ATGATAAACAGTCTATCATTTATTGTGGATAACCCGTGGTATTGGTCTTCATGGGCTATTGTTCTTTACCTTTGCCTTTC
TATAGGCCTTATTGCTTTTGCTTCATGGTGGCGTTCTCGTTGGGTTACCAAAGTAAACCGAAAGTTAAAAGCTCAGGTGG
CCTTGAAAACGGATCAACTACGGCATCAAAGCAAAATTGTTTTGACTAATAACCAGCAGTTGCGCAAGCAATTACAAATT
CGCCATATCGTTGTTGAACAGATGTTAGATTCTATTACTCCTACATTAAATCAGCTGATTTATCGCTCCCAACTCCATCA
ACTCGCGCGACTTGAGTCTTTAGCTTTAAAAGTAAAACGTGAACTGGCGTTACTTCGTAACGTAAGAAATGATAAAACAG
CGACTCAGTTGCTCTACGATCTATCGATCATCTTGAACTCTTGTGTGGACGGATGGCGTGAAGAGTTCGCGAAAGCGAAT
ATTTCGTTGGCGGTGAACAATGAGCTTAAACAAGCTTATATTGAATCTGCCCATTTTAACCTAGACATCATTTTCAATAC
GCTACTGTCTGATGCGGTAAAACGTCTTTATAGAAATCAAGAGCTACAAATTCATTGTTATGAAAGGGAGAAAAGACTGT
TTATTGTGATGATTGACTGTGGCGATCAGGTGCAATCCATCAATAGTGATAAGCGTATCTCTGGTTTTGAGCTAGAGGAA
ATGCAACTGTTAGTGCAGCGCAGTGGTGGGGAAATACATATTTTTTCATCGCCAGAACGAAATTTAGTTGAGCTTTCTTG
GCCATCAGTAGAGCTTGTGAGTGATGCACCTGAAATGATCGTCGTAGAAGAGCATTCAGAGGACAAGTCTATTGATGTAA
CGGAAAAAGAGTGGCTTAAAAAAGTAGAAAAATTGGTACACAATTACTATTCAGATCCTGAATTTAGTACCTCTAGTGCG
GCTAAATCACTCTTCGTATCGGAGCGTAGCTTGCAGCGTCGTTTTAAAGCGATCACCAATAAAACATTCAAAGAGTATCT
AAATGAGATCCGCTTAGAGAAAGCGTGCCAATATTTGCTCGCAGGAGGAAAAGTCGCCCAAGTCGCTTTTGATTGTGGGT
TTAATGATCCGTCTTATTTCAGCCAAAGATTTAAACATCACTTCGGTTTATCGCCAACCCAATTTGTTGATGATAACGAG
TAA

Domains

Predicted by InterproScan.

Helix-turn-helix domain (HTH_18)

(1041-1116)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  tfoS Vibrio cholerae O1 biovar El Tor strain E7946

49.157

100

0.495