Detailed information    

insolico Bioinformatically predicted

Overview

Name   rpoN/rpoN1   Type   Machinery gene
Locus tag   N5E84_RS00045 Genome accession   NZ_CP104554
Coordinates   6294..6827 (-) Length   177 a.a.
NCBI ID   WP_261676507.1    Uniprot ID   -
Organism   Vibrio sp. J502     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1294..11827
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  N5E84_RS00015 (N5E84_00015) pmbA 1484..2833 (+) 1350 Protein_2 metalloprotease PmbA -
  N5E84_RS00020 (N5E84_00020) mgtE 2932..4287 (-) 1356 WP_019282524.1 magnesium transporter -
  N5E84_RS00025 (N5E84_00025) - 4439..4715 (-) 277 Protein_4 HPr family phosphocarrier protein -
  N5E84_RS21295 - 4703..5065 (-) 363 Protein_5 hypothetical protein -
  N5E84_RS21300 - 5144..5326 (-) 183 WP_410001426.1 hypothetical protein -
  N5E84_RS21305 - 5440..5580 (-) 141 WP_410001427.1 RNase adapter RapZ -
  N5E84_RS00035 (N5E84_00035) - 5667..6041 (-) 375 WP_261676506.1 PTS sugar transporter subunit IIA -
  N5E84_RS00040 (N5E84_00040) hpf 6107..6330 (-) 224 Protein_9 ribosome hibernation-promoting factor, HPF/YfiA family -
  N5E84_RS00045 (N5E84_00045) rpoN/rpoN1 6294..6827 (-) 534 WP_261676507.1 hypothetical protein Machinery gene
  N5E84_RS00050 (N5E84_00050) - 6794..7087 (-) 294 WP_261676508.1 hypothetical protein -
  N5E84_RS21310 - 7136..7219 (-) 84 WP_410001442.1 hypothetical protein -
  N5E84_RS21315 - 7225..7470 (-) 246 Protein_13 RNA polymerase factor sigma-54 -
  N5E84_RS00060 (N5E84_00060) - 7534..7665 (-) 132 WP_261676533.1 hypothetical protein -
  N5E84_RS21320 - 7663..7820 (-) 158 Protein_15 RNA polymerase factor sigma-54 -
  N5E84_RS21195 - 7872..8114 (-) 243 WP_315903790.1 hypothetical protein -
  N5E84_RS00070 (N5E84_00070) - 8068..8598 (-) 531 Protein_17 ABC transporter ATP-binding protein -
  N5E84_RS00075 (N5E84_00075) lptA 8601..9101 (-) 501 WP_017047032.1 lipopolysaccharide transport periplasmic protein LptA -
  N5E84_RS00080 (N5E84_00080) lptC 9082..9645 (-) 564 WP_019282521.1 LPS export ABC transporter periplasmic protein LptC -
  N5E84_RS00085 (N5E84_00085) kdsC 9642..10196 (-) 555 WP_202599046.1 3-deoxy-manno-octulosonate-8-phosphatase KdsC -
  N5E84_RS00090 (N5E84_00090) kdsD 10196..11170 (-) 975 WP_019282520.1 arabinose-5-phosphate isomerase KdsD -

Sequence

Protein


Download         Length: 177 a.a.        Molecular weight: 19886.06 Da        Isoelectric Point: 9.4200

>NTDB_id=730422 N5E84_RS00045 WP_261676507.1 6294..6827(-) (rpoN/rpoN1) [Vibrio sp. J502]
MQEAKWLIKSLESRNETLLKVAKCIVEHQRDFFEYGEEAMKPMVLNDVALAVEMHESTISTRVTTQKYMHTPRGIFELKY
FFSSHVSTDSGGECSSTAIRALIKKLVAAENTAKPLSDSKIADLLADQGIQVARRTIAKYRESLGIAPSSQRKTPTVRHK
TEKESLCKSILMPITLI

Nucleotide


Download         Length: 534 bp        

>NTDB_id=730422 N5E84_RS00045 WP_261676507.1 6294..6827(-) (rpoN/rpoN1) [Vibrio sp. J502]
TTGCAAGAAGCAAAATGGCTTATTAAGAGTTTAGAAAGTAGAAACGAGACACTGCTCAAAGTTGCCAAGTGTATTGTTGA
ACATCAACGTGATTTCTTTGAGTATGGTGAAGAGGCGATGAAGCCAATGGTACTCAATGACGTTGCTTTAGCGGTAGAAA
TGCATGAATCCACCATATCAACAAGGGTGACAACGCAGAAGTACATGCATACTCCGCGTGGTATTTTCGAATTGAAATAC
TTCTTCTCCAGCCATGTCAGTACCGACAGCGGGGGAGAGTGTTCATCGACTGCAATACGAGCACTGATTAAAAAACTGGT
GGCCGCTGAAAATACAGCCAAACCATTAAGTGACAGTAAAATTGCAGATCTACTGGCTGACCAAGGGATTCAGGTAGCTA
GACGGACGATAGCTAAATACCGTGAATCGTTGGGCATTGCTCCATCGAGTCAGCGCAAAACGCCTACTGTAAGGCACAAA
ACAGAGAAGGAAAGTCTATGCAAATCAATATTAATGCCCATCACATTGATCTGA

Domains

Predicted by InterproScan.

Sigma-54, DNA binding domain (Sigma54_DBD)

(1-153)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rpoN/rpoN1 Ralstonia pseudosolanacearum GMI1000

61.039

87.006

0.531