Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxS   Type   Regulator
Locus tag   GZI12_RS02155 Genome accession   NZ_AP019651
Coordinates   426670..427188 (+) Length   172 a.a.
NCBI ID   WP_162045564.1    Uniprot ID   -
Organism   Vibrio taketomensis strain C4III291     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 421670..432188
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GZI12_RS02145 gshA 424461..426029 (+) 1569 WP_162045562.1 glutamate--cysteine ligase -
  GZI12_RS02150 - 426040..426651 (+) 612 WP_162045563.1 hypothetical protein -
  GZI12_RS02155 luxS 426670..427188 (+) 519 WP_162045564.1 S-ribosylhomocysteine lyase Regulator
  GZI12_RS02160 - 427258..427734 (-) 477 WP_162045565.1 RDD family protein -
  GZI12_RS02170 celB 428477..429793 (+) 1317 WP_162045566.1 PTS cellobiose transporter subunit IIC -
  GZI12_RS02175 - 429797..430762 (+) 966 WP_162045567.1 N(4)-(beta-N-acetylglucosaminyl)-L-asparaginase -
  GZI12_RS02180 - 430775..431089 (+) 315 WP_162045568.1 PTS sugar transporter subunit IIB -
  GZI12_RS02185 - 431089..431406 (+) 318 WP_162047510.1 PTS lactose/cellobiose transporter subunit IIA -

Sequence

Protein


Download         Length: 172 a.a.        Molecular weight: 18980.80 Da        Isoelectric Point: 4.8487

>NTDB_id=73039 GZI12_RS02155 WP_162045564.1 426670..427188(+) (luxS) [Vibrio taketomensis strain C4III291]
MPLLDSFTVDHTRMHAPAVRVAKTMTTPKGDTITVFDLRFTAPNKDILSEKGIHTLEHLYAGFMRNHLNGDAIEIIDISP
MGCRTGFYMSLIGTPSEQQVADAWLAAMQDVLKVESQNKIPELNEYQCGTAAMHSLEEAKQIAEAIIAAGISVNKNDELA
LPEAMLKELRID

Nucleotide


Download         Length: 519 bp        

>NTDB_id=73039 GZI12_RS02155 WP_162045564.1 426670..427188(+) (luxS) [Vibrio taketomensis strain C4III291]
ATGCCATTATTAGATAGTTTTACCGTTGATCATACACGTATGCATGCACCGGCGGTTCGAGTTGCAAAAACCATGACGAC
GCCTAAAGGCGACACGATTACCGTGTTTGATTTGCGTTTTACAGCTCCGAACAAAGACATTCTATCGGAAAAAGGAATTC
ATACGCTTGAGCACCTATACGCTGGCTTTATGCGTAACCATTTAAATGGTGATGCGATTGAGATCATTGATATCTCCCCA
ATGGGATGCCGCACCGGTTTTTACATGAGTTTGATTGGTACGCCAAGCGAGCAGCAAGTGGCAGATGCATGGCTGGCAGC
TATGCAAGATGTGCTAAAGGTCGAAAGCCAAAACAAAATCCCAGAGCTCAACGAATATCAATGTGGTACAGCGGCGATGC
ACTCACTGGAAGAAGCAAAGCAAATTGCTGAAGCAATCATTGCTGCGGGTATCTCAGTAAACAAAAATGATGAGTTGGCG
CTACCAGAAGCGATGCTAAAAGAACTGCGTATCGATTAG

Domains

Predicted by InterproScan.

S-Ribosylhomocysteinase (LuxS) (LuxS)

(4-154)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxS Vibrio cholerae strain A1552

87.719

99.419

0.872

Multiple sequence alignment