Detailed information NTG0073032

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: GZI12_RS01965
• Genome accession: NZ_AP019651
• Coordinates: 392325..393305 (+)
• Length: 326 a.a.
• NCBI ID: WP_162045539.1
• Uniprot ID: -
• Organism: Vibrio taketomensis strain C4III291
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 387325..398305

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
GZI12_RS01930	ftsB	387365..387646 (+)	282	WP_162045533.1	cell division protein FtsB	-
GZI12_RS01935	ispD	387648..388355 (+)	708	WP_162045534.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-
GZI12_RS01940	ispF	388359..388838 (+)	480	WP_162045535.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
GZI12_RS01945	truD	388883..389929 (+)	1047	WP_162045536.1	tRNA pseudouridine(13) synthase TruD	-
GZI12_RS01950	surE	389941..390687 (+)	747	WP_162047508.1	5'/3'-nucleotidase SurE	-
GZI12_RS01955	-	390687..391313 (+)	627	WP_162045537.1	protein-L-isoaspartate(D-aspartate) O-methyltransferase	-
GZI12_RS01960	-	391316..392236 (+)	921	WP_162045538.1	peptidoglycan DD-metalloendopeptidase family protein	-
GZI12_RS01965	rpoS	392325..393305 (+)	981	WP_162045539.1	RNA polymerase sigma factor RpoS	Regulator
GZI12_RS01970	-	393382..394656 (-)	1275	WP_162045540.1	HlyC/CorC family transporter	-
GZI12_RS01975	-	394826..395620 (-)	795	WP_162045541.1	inner membrane protein YpjD	-
GZI12_RS01980	ffh	395803..397179 (+)	1377	WP_162045542.1	signal recognition particle protein	-
GZI12_RS01985	rpsP	397390..397638 (+)	249	WP_162045543.1	30S ribosomal protein S16	-
GZI12_RS01990	rimM	397667..398215 (+)	549	WP_075715362.1	ribosome maturation factor RimM	-

Sequence

Protein

• Length: 326 a.a.
• Molecular weight: 37388.30 Da
• Isoelectric Point: 4.5465

>NTDB_id=73032 GZI12_RS01965 WP_162045539.1 392325..393305(+) (rpoS) [Vibrio taketomensis strain C4III291]
MSISNTAAKVEEFDIENMEGFDVEEQLSEKSSSTETVKEEFEVSTKNLDATQLYLGEIGFSPLLTAEEEVLYARRALRGD
EAARKRMIESNLRLVVKISRRYSNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERALMNQTRTIRL
PIHVVKELNIYLRTARELSQKLDHEPTAEEIATQLDKPVEDVSKMLRLNERISSVDTPIGGDGEKALLDIIPDVNHSDPE
VSTQDDDIKDSLIGWLDELNPKQKEVLARRFGLLGYEPSTLEEVGREINLTRERVRQIQVEGLRRLREILVKQGLSMENL
FSIEDD

Nucleotide

• Length: 981 bp

>NTDB_id=73032 GZI12_RS01965 WP_162045539.1 392325..393305(+) (rpoS) [Vibrio taketomensis strain C4III291]
ATGAGTATCAGCAACACAGCAGCAAAAGTCGAAGAGTTTGATATCGAAAACATGGAAGGTTTTGATGTCGAGGAACAACT
CAGCGAAAAATCATCATCTACAGAAACTGTTAAAGAAGAATTCGAGGTTTCAACCAAAAACCTTGATGCAACCCAACTCT
ATTTAGGAGAAATTGGTTTTTCTCCACTCCTAACTGCAGAAGAAGAAGTACTCTACGCTCGACGTGCATTGCGAGGCGAT
GAAGCTGCACGTAAGCGCATGATTGAGAGTAACTTGCGTTTAGTTGTGAAAATTTCTCGACGTTATAGCAACCGTGGTTT
AGCACTGCTCGATTTAATTGAAGAAGGTAATCTTGGTTTGATTCGTGCGGTAGAGAAGTTCGACCCTGAAAGAGGCTTCC
GTTTTTCTACTTACGCTACATGGTGGATTCGTCAAACTATTGAACGTGCGCTAATGAATCAGACTCGTACGATTCGCCTA
CCTATTCATGTGGTGAAAGAGTTAAACATTTACTTGCGTACCGCACGTGAACTGTCGCAAAAGCTTGATCATGAGCCAAC
GGCTGAAGAGATCGCTACTCAATTGGATAAGCCAGTAGAAGATGTGAGCAAAATGCTACGTCTTAATGAGCGCATTAGCT
CGGTAGATACACCAATCGGTGGTGATGGTGAAAAAGCGCTGCTTGATATCATTCCTGATGTGAATCACTCAGATCCTGAA
GTGTCGACGCAAGATGATGACATTAAAGATTCGTTGATAGGCTGGTTAGATGAGTTAAACCCTAAGCAGAAAGAAGTTTT
GGCGCGCCGTTTTGGATTGCTAGGGTACGAGCCTTCAACACTGGAAGAAGTTGGTCGTGAAATTAATCTGACTCGTGAGC
GAGTTCGCCAAATTCAGGTAGAAGGTCTACGTCGATTACGTGAGATTCTAGTTAAGCAAGGCCTTAGCATGGAAAACCTA
TTCAGCATCGAAGATGACTAA

Domains

Predicted by InterproScan.

• Sigma-70 region 2 (Sigma70_r2) (87-156)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (49-82)

• Sigma-70, region 4 (Sigma70_r4) (255-308)

• Sigma-70 region 3 (Sigma70_r3) (167-240)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	82.687	100	0.85