Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   N5O76_RS14480 Genome accession   NZ_CP104539
Coordinates   2965373..2966002 (-) Length   209 a.a.
NCBI ID   WP_000839153.1    Uniprot ID   A0A9Q6Y251
Organism   Escherichia coli strain E6     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 2960373..2971002
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  N5O76_RS14465 (N5O76_14465) helD 2960615..2962669 (-) 2055 WP_053264594.1 DNA helicase IV -
  N5O76_RS14470 (N5O76_14470) yccF 2962792..2963238 (+) 447 WP_001261231.1 YccF domain-containing protein -
  N5O76_RS14475 (N5O76_14475) yccS 2963248..2965410 (+) 2163 WP_000875044.1 YccS family putative transporter -
  N5O76_RS14480 (N5O76_14480) sxy/tfoX 2965373..2966002 (-) 630 WP_000839153.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  N5O76_RS14485 (N5O76_14485) sulA 2966221..2966730 (+) 510 WP_224471422.1 SOS-induced cell division inhibitor SulA -
  N5O76_RS14490 (N5O76_14490) ompA 2967087..2968127 (+) 1041 WP_000750416.1 porin OmpA -
  N5O76_RS14495 (N5O76_14495) matP 2968203..2968655 (-) 453 WP_000877161.1 macrodomain Ter protein MatP -
  N5O76_RS14500 (N5O76_14500) ycbZ 2968841..2970601 (+) 1761 WP_000156526.1 Lon protease family protein -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24147.02 Da        Isoelectric Point: 9.2180

>NTDB_id=730295 N5O76_RS14480 WP_000839153.1 2965373..2966002(-) (sxy/tfoX) [Escherichia coli strain E6]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=730295 N5O76_RS14480 WP_000839153.1 2965373..2966002(-) (sxy/tfoX) [Escherichia coli strain E6]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGCAGTTACAGCCTGACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAACATCCGCCTGTCTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGTGCCATTATCGGCATTCATGAAGCTGCGCTCCCGGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

100

100

1