Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxP   Type   Regulator
Locus tag   Vt282_RS16445 Genome accession   NZ_AP019650
Coordinates   604035..605141 (+) Length   368 a.a.
NCBI ID   WP_162064088.1    Uniprot ID   -
Organism   Vibrio taketomensis strain C4III282     
Function   autoinducer sensor (predicted from homology)   
Competence regulation

Genomic Context

Location: 599035..610141
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  Vt282_RS16415 glpK 599806..601305 (+) 1500 WP_162064085.1 glycerol kinase GlpK -
  Vt282_RS16420 - 601396..601641 (-) 246 WP_162064086.1 YgjV family protein -
  Vt282_RS16425 - 601964..602287 (-) 324 WP_162048107.1 DUF496 family protein -
  Vt282_RS16430 - 602534..602725 (+) 192 WP_162064545.1 hypothetical protein -
  Vt282_RS16435 - 602960..603607 (+) 648 WP_162048109.1 YceH family protein -
  Vt282_RS21515 - 603639..603845 (+) 207 WP_332057986.1 GIY-YIG nuclease family protein -
  Vt282_RS16445 luxP 604035..605141 (+) 1107 WP_162064088.1 autoinducer 2-binding periplasmic protein LuxP Regulator
  Vt282_RS16450 luxQ 605141..607689 (+) 2549 Protein_540 quorum-sensing autoinducer 2 sensor kinase/phosphatase LuxQ -
  Vt282_RS16455 - 607692..608351 (-) 660 WP_162048112.1 flagellar brake protein -
  Vt282_RS16460 glpD 608416..609936 (-) 1521 WP_167515613.1 glycerol-3-phosphate dehydrogenase -

Sequence

Protein


Download         Length: 368 a.a.        Molecular weight: 41769.96 Da        Isoelectric Point: 5.1340

>NTDB_id=73028 Vt282_RS16445 WP_162064088.1 604035..605141(+) (luxP) [Vibrio taketomensis strain C4III282]
MGKSTLIPLFVIASTASSLVAADSTQILNGYWQYGEYLKANPSQNRLTNELAQAVRDKPTPLNVKQKKPVTISVVYPGQQ
VSDYWVRNIKAFESRLDELNIRYNINQVFTRPNLDFRQQSMSLLEAIESDADYLVFTLDTTRHRKFIEHVLSSTDTKLIL
QNITTPVRAWSKQQPFMYVGFDHLRGTHLLESYYKQHIPAGSKYSVLYYSEGYISDVRGDSFIEQMTHYDSYDLVSSYYT
KATQESGYSATLNIIDQDPNIKFIYACATDVALGAVEALKDKHREDVLLNGWGGGSAELESIARGDLDVTVMRMNDDTGV
AMAEAIKWDLEGKAVPTVYSGDFELVTSEDSMERINELKQRAFRYSDR

Nucleotide


Download         Length: 1107 bp        

>NTDB_id=73028 Vt282_RS16445 WP_162064088.1 604035..605141(+) (luxP) [Vibrio taketomensis strain C4III282]
ATGGGCAAATCCACACTCATTCCCCTTTTTGTGATTGCATCGACGGCAAGTTCTCTTGTCGCAGCAGATAGCACGCAAAT
ACTCAATGGTTATTGGCAATATGGCGAATACCTAAAAGCGAACCCAAGTCAAAATCGGTTGACTAATGAACTGGCACAAG
CAGTGAGAGATAAACCGACACCGCTTAATGTAAAACAGAAGAAACCGGTCACCATTTCTGTCGTTTATCCTGGTCAGCAA
GTTTCTGATTACTGGGTGCGCAACATCAAGGCGTTTGAATCCCGGCTCGACGAGCTAAACATTCGATACAACATCAACCA
AGTCTTTACTCGTCCTAATTTAGATTTTCGCCAGCAAAGCATGTCGCTACTCGAAGCGATAGAGAGTGATGCCGATTATT
TGGTGTTTACGTTAGATACTACTCGTCATCGCAAATTTATCGAACATGTATTGAGCTCAACTGATACTAAACTGATCTTA
CAAAACATCACCACGCCTGTACGCGCTTGGTCTAAACAACAGCCGTTTATGTATGTTGGATTCGACCATCTTCGAGGTAC
TCACTTGCTCGAGTCCTACTACAAACAGCATATTCCAGCAGGCAGCAAATACTCAGTGCTGTATTACTCTGAAGGTTATA
TCAGTGATGTAAGAGGAGACAGTTTTATTGAACAAATGACTCATTATGACAGTTATGATTTAGTCTCTTCTTACTATACA
AAGGCGACACAAGAATCTGGGTATAGCGCCACTCTCAACATTATCGATCAAGACCCAAATATTAAGTTCATTTATGCTTG
TGCGACCGATGTTGCCTTAGGTGCTGTGGAAGCGCTAAAAGATAAGCATCGTGAAGATGTCTTACTCAATGGTTGGGGTG
GAGGATCCGCGGAGTTGGAGTCGATCGCGCGTGGCGACTTGGATGTGACTGTAATGAGAATGAATGATGATACCGGCGTC
GCAATGGCGGAAGCCATCAAGTGGGACCTTGAGGGTAAGGCTGTTCCCACTGTTTATTCAGGCGATTTCGAACTGGTGAC
ATCAGAAGATTCAATGGAAAGAATCAACGAATTAAAACAACGTGCTTTTAGGTATTCAGACCGATAA

Domains

Predicted by InterproScan.

Periplasmic binding protein domain (Peripla_BP_4)

(72-327)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxP Vibrio cholerae strain A1552

67.12

100

0.671

Multiple sequence alignment