Detailed information NTG0073023

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: Vt282_RS11925
• Genome accession: NZ_AP019649
• Coordinates: 2583355..2584335 (-)
• Length: 326 a.a.
• NCBI ID: WP_162063474.1
• Uniprot ID: -
• Organism: Vibrio taketomensis strain C4III282
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 2578355..2589335

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
Vt282_RS11900	rimM	2578445..2578993 (-)	549	WP_075715362.1	ribosome maturation factor RimM	-
Vt282_RS11905	rpsP	2579022..2579270 (-)	249	WP_162045543.1	30S ribosomal protein S16	-
Vt282_RS11910	ffh	2579481..2580857 (-)	1377	WP_162045542.1	signal recognition particle protein	-
Vt282_RS11915	-	2581040..2581834 (+)	795	WP_162063473.1	inner membrane protein YpjD	-
Vt282_RS11920	-	2582005..2583279 (+)	1275	WP_162045540.1	HlyC/CorC family transporter	-
Vt282_RS11925	rpoS	2583355..2584335 (-)	981	WP_162063474.1	RNA polymerase sigma factor RpoS	Regulator
Vt282_RS11930	-	2584424..2585344 (-)	921	WP_162045538.1	peptidoglycan DD-metalloendopeptidase family protein	-
Vt282_RS11935	-	2585347..2585973 (-)	627	WP_162063475.1	protein-L-isoaspartate(D-aspartate) O-methyltransferase	-
Vt282_RS11940	surE	2585973..2586719 (-)	747	WP_162047508.1	5'/3'-nucleotidase SurE	-
Vt282_RS11945	truD	2586731..2587777 (-)	1047	WP_162063476.1	tRNA pseudouridine(13) synthase TruD	-
Vt282_RS11950	ispF	2587822..2588301 (-)	480	WP_162063477.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
Vt282_RS11955	ispD	2588305..2589012 (-)	708	WP_167515605.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-
Vt282_RS11960	ftsB	2589014..2589295 (-)	282	WP_162045533.1	cell division protein FtsB	-

Sequence

Protein

• Length: 326 a.a.
• Molecular weight: 37316.23 Da
• Isoelectric Point: 4.5754

>NTDB_id=73023 Vt282_RS11925 WP_162063474.1 2583355..2584335(-) (rpoS) [Vibrio taketomensis strain C4III282]
MSISNTAAKVEEFDIENMEGFDVEEQLSGKSSSTETVKEEFEVSTKNLDATQLYLGEIGFSPLLTAEEEVLYARRALRGD
EAARKRMIESNLRLVVKISRRYSNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERALMNQTRTIRL
PIHVVKELNIYLRTARELSQKLDHEPTAEEIATQLDKPVEDVSKMLRLNERISSVDTPIGGDGEKALLDIIPDVNHSDPE
VSTQDDDIKDSLIGWLDELNPKQKEVLARRFGLLGYEPSTLEEVGREINLTRERVRQIQVEGLRRLREILVKQGLSMENL
FSIEDD

Nucleotide

• Length: 981 bp

>NTDB_id=73023 Vt282_RS11925 WP_162063474.1 2583355..2584335(-) (rpoS) [Vibrio taketomensis strain C4III282]
ATGAGTATCAGCAACACAGCAGCAAAAGTCGAAGAGTTTGATATCGAAAACATGGAAGGTTTTGATGTCGAGGAACAACT
CAGCGGAAAATCATCATCTACAGAAACTGTTAAAGAAGAATTCGAGGTTTCAACCAAAAACCTTGATGCAACCCAACTCT
ATTTAGGAGAAATTGGTTTTTCTCCACTCCTAACTGCAGAAGAAGAAGTACTCTACGCTCGACGTGCATTGCGAGGCGAT
GAAGCGGCACGTAAGCGCATGATTGAGAGTAACTTGCGTTTAGTTGTGAAAATTTCTCGACGTTATAGCAACCGTGGTTT
AGCACTGCTCGATTTAATTGAAGAAGGTAATCTTGGTTTGATTCGTGCGGTAGAGAAGTTCGACCCTGAAAGAGGCTTCC
GTTTTTCTACTTACGCTACATGGTGGATTCGTCAAACTATTGAACGTGCGCTAATGAATCAGACTCGTACGATTCGCCTA
CCTATTCATGTGGTGAAAGAGTTAAACATTTACTTGCGTACTGCGCGTGAACTGTCGCAAAAGCTTGATCATGAGCCAAC
GGCTGAAGAGATCGCTACTCAATTGGATAAGCCAGTAGAAGATGTGAGCAAAATGCTACGTCTTAATGAGCGCATTAGCT
CGGTAGATACACCAATCGGTGGTGATGGTGAAAAAGCGCTGCTTGATATCATCCCTGATGTGAATCACTCAGATCCTGAA
GTGTCGACGCAAGATGATGACATTAAAGATTCGTTGATAGGCTGGTTAGATGAGTTAAACCCTAAGCAGAAAGAAGTTTT
GGCGCGCCGTTTTGGATTGCTAGGGTACGAGCCTTCAACACTGGAAGAAGTCGGTCGTGAAATTAATCTTACTCGCGAGC
GAGTTCGCCAAATTCAGGTAGAAGGTCTACGTCGACTACGTGAGATTCTAGTTAAGCAAGGCCTTAGCATGGAAAACCTA
TTTAGCATCGAAGATGACTAA

Domains

Predicted by InterproScan.

• Sigma-70 region 2 (Sigma70_r2) (87-156)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (49-82)

• Sigma-70, region 4 (Sigma70_r4) (255-308)

• Sigma-70 region 3 (Sigma70_r3) (167-240)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	82.687	100	0.85