Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   N5O73_RS14390 Genome accession   NZ_CP104526
Coordinates   2935402..2936031 (-) Length   209 a.a.
NCBI ID   WP_000839153.1    Uniprot ID   A0A9Q6Y251
Organism   Escherichia coli strain E8     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 2930402..2941031
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  N5O73_RS14375 (N5O73_14380) helD 2930644..2932698 (-) 2055 WP_261246473.1 DNA helicase IV -
  N5O73_RS14380 (N5O73_14385) yccF 2932821..2933267 (+) 447 WP_001261235.1 YccF domain-containing protein -
  N5O73_RS14385 (N5O73_14390) yccS 2933277..2935439 (+) 2163 WP_000875061.1 YccS family putative transporter -
  N5O73_RS14390 (N5O73_14395) sxy/tfoX 2935402..2936031 (-) 630 WP_000839153.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  N5O73_RS14395 (N5O73_14400) sulA 2936250..2936759 (+) 510 WP_000288710.1 SOS-induced cell division inhibitor SulA -
  N5O73_RS14400 (N5O73_14405) ompA 2937116..2938156 (+) 1041 WP_001340343.1 porin OmpA -
  N5O73_RS14405 (N5O73_14410) matP 2938232..2938684 (-) 453 WP_000877161.1 macrodomain Ter protein MatP -
  N5O73_RS14410 (N5O73_14415) ycbZ 2938870..2940630 (+) 1761 WP_000156518.1 Lon protease family protein -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24147.02 Da        Isoelectric Point: 9.2180

>NTDB_id=730229 N5O73_RS14390 WP_000839153.1 2935402..2936031(-) (sxy/tfoX) [Escherichia coli strain E8]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=730229 N5O73_RS14390 WP_000839153.1 2935402..2936031(-) (sxy/tfoX) [Escherichia coli strain E8]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGCAGTTACAGCCTGACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAACATCCGCCTGTCTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGTGCCATTATCGGCATTCATGAAGCTGCGCTCCCGGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

100

100

1