Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxS   Type   Regulator
Locus tag   Vt282_RS11735 Genome accession   NZ_AP019649
Coordinates   2550029..2550547 (-) Length   172 a.a.
NCBI ID   WP_162063457.1    Uniprot ID   -
Organism   Vibrio taketomensis strain C4III282     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 2545029..2555547
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  Vt282_RS11705 - 2545810..2546127 (-) 318 WP_162047510.1 PTS lactose/cellobiose transporter subunit IIA -
  Vt282_RS11710 - 2546127..2546441 (-) 315 WP_162045568.1 PTS sugar transporter subunit IIB -
  Vt282_RS11715 - 2546454..2547419 (-) 966 WP_162063455.1 N(4)-(beta-N-acetylglucosaminyl)-L-asparaginase -
  Vt282_RS11720 celB 2547423..2548739 (-) 1317 WP_162045566.1 PTS cellobiose transporter subunit IIC -
  Vt282_RS11730 - 2549483..2549959 (+) 477 WP_162063456.1 RDD family protein -
  Vt282_RS11735 luxS 2550029..2550547 (-) 519 WP_162063457.1 S-ribosylhomocysteine lyase Regulator
  Vt282_RS11740 - 2550566..2551177 (-) 612 WP_162045563.1 hypothetical protein -
  Vt282_RS11745 gshA 2551188..2552756 (-) 1569 WP_162045562.1 glutamate--cysteine ligase -

Sequence

Protein


Download         Length: 172 a.a.        Molecular weight: 18966.73 Da        Isoelectric Point: 4.7114

>NTDB_id=73018 Vt282_RS11735 WP_162063457.1 2550029..2550547(-) (luxS) [Vibrio taketomensis strain C4III282]
MPLLDSFTVDHTRMHAPAVRVAKTMTTPKGDTITVFDLRFTAPNKDILSEKGIHTLEHLYAGFMRNHLNGDAVEIIDISP
MGCRTGFYMSLIGTPSEQQVADAWLAAMQDVLKVESQNQIPELNEYQCGTAAMHSLEEAKQIAEAIIAAGISVNKNDELA
LPEAMLKELRID

Nucleotide


Download         Length: 519 bp        

>NTDB_id=73018 Vt282_RS11735 WP_162063457.1 2550029..2550547(-) (luxS) [Vibrio taketomensis strain C4III282]
ATGCCATTATTAGATAGTTTTACCGTTGATCATACACGTATGCATGCACCGGCGGTTCGAGTTGCAAAAACCATGACGAC
GCCTAAAGGCGACACGATTACCGTGTTTGATTTGCGTTTTACAGCTCCGAACAAAGACATTCTATCGGAAAAAGGGATTC
ATACGCTTGAGCACCTATACGCTGGCTTTATGCGTAACCATTTAAATGGTGATGCGGTTGAGATCATTGATATTTCCCCA
ATGGGATGCCGCACCGGTTTTTACATGAGTTTGATTGGTACGCCAAGCGAGCAGCAAGTGGCCGATGCATGGCTGGCAGC
TATGCAAGATGTGCTAAAGGTCGAAAGCCAAAACCAAATCCCAGAGCTCAACGAATATCAATGTGGTACTGCGGCGATGC
ACTCACTGGAAGAAGCGAAGCAAATCGCTGAAGCAATCATTGCTGCGGGTATATCAGTGAATAAAAATGATGAGTTGGCG
CTACCAGAAGCGATGCTAAAAGAACTGCGTATCGATTAG

Domains

Predicted by InterproScan.

S-Ribosylhomocysteinase (LuxS) (LuxS)

(4-154)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxS Vibrio cholerae strain A1552

88.889

99.419

0.884

Multiple sequence alignment