Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   N5O78_RS07960 Genome accession   NZ_CP104521
Coordinates   1674349..1674978 (+) Length   209 a.a.
NCBI ID   WP_000839153.1    Uniprot ID   A0A9Q6Y251
Organism   Escherichia coli strain E5     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 1669349..1679978
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  N5O78_RS07940 (N5O78_07940) ycbZ 1669750..1671510 (-) 1761 WP_094122338.1 Lon protease family protein -
  N5O78_RS07945 (N5O78_07945) matP 1671696..1672148 (+) 453 WP_000877161.1 macrodomain Ter protein MatP -
  N5O78_RS07950 (N5O78_07950) ompA 1672224..1673264 (-) 1041 WP_001314606.1 porin OmpA -
  N5O78_RS07955 (N5O78_07955) sulA 1673621..1674130 (-) 510 WP_000288705.1 SOS-induced cell division inhibitor SulA -
  N5O78_RS07960 (N5O78_07960) sxy/tfoX 1674349..1674978 (+) 630 WP_000839153.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  N5O78_RS07965 (N5O78_07965) yccS 1674941..1677103 (-) 2163 WP_157674750.1 YccS family putative transporter -
  N5O78_RS07970 (N5O78_07970) yccF 1677113..1677559 (-) 447 WP_001261236.1 YccF domain-containing protein -
  N5O78_RS07975 (N5O78_07975) helD 1677682..1679736 (+) 2055 WP_001317751.1 DNA helicase IV -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24147.02 Da        Isoelectric Point: 9.2180

>NTDB_id=730176 N5O78_RS07960 WP_000839153.1 1674349..1674978(+) (sxy/tfoX) [Escherichia coli strain E5]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=730176 N5O78_RS07960 WP_000839153.1 1674349..1674978(+) (sxy/tfoX) [Escherichia coli strain E5]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGCAGTTACAGCCTGACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAACATCCGCCTGTCTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCTGCGCT
GAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGGGCCATTATCGGCATTCATGAAGCTGCGCTCCCGGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

100

100

1