Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   N5O79_RS06305 Genome accession   NZ_CP104516
Coordinates   1187676..1188305 (-) Length   209 a.a.
NCBI ID   WP_000839153.1    Uniprot ID   A0A9Q6Y251
Organism   Escherichia coli strain E4     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 1182676..1193305
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  N5O79_RS06290 (N5O79_06290) helD 1182918..1184972 (-) 2055 WP_001295354.1 DNA helicase IV -
  N5O79_RS06295 (N5O79_06295) yccF 1185095..1185541 (+) 447 WP_098704097.1 YccF domain-containing protein -
  N5O79_RS06300 (N5O79_06300) yccS 1185551..1187713 (+) 2163 WP_000875061.1 YccS family putative transporter -
  N5O79_RS06305 (N5O79_06305) sxy/tfoX 1187676..1188305 (-) 630 WP_000839153.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  N5O79_RS06310 (N5O79_06310) sulA 1188524..1189033 (+) 510 WP_000288710.1 SOS-induced cell division inhibitor SulA -
  N5O79_RS06315 (N5O79_06315) ompA 1189390..1190430 (+) 1041 WP_000750416.1 porin OmpA -
  N5O79_RS06320 (N5O79_06320) matP 1190506..1190958 (-) 453 WP_000877161.1 macrodomain Ter protein MatP -
  N5O79_RS06325 (N5O79_06325) ycbZ 1191144..1192904 (+) 1761 WP_000156531.1 Lon protease family protein -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24147.02 Da        Isoelectric Point: 9.2180

>NTDB_id=730152 N5O79_RS06305 WP_000839153.1 1187676..1188305(-) (sxy/tfoX) [Escherichia coli strain E4]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=730152 N5O79_RS06305 WP_000839153.1 1187676..1188305(-) (sxy/tfoX) [Escherichia coli strain E4]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGCAGTTACAGCCTGACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAACATCCGCCTGTCTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGTGCCATTATCGGCATTCATGAAGCTGCGCTCCCGGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

100

100

1